RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZC2HC1CQ53FD0 456 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-227ENST00000557269 HERC4Q5GLZ8 1057 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-227ENST00000557269 C16orf59Q7L2K0 433 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 TAS1R3Q7RTX0 852 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 FAM228AQ86W67 206 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 IFNLR1Q8IU57 520 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-227ENST00000557269 CCDC65Q8IXS2 484 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 ELOA2Q8IYF1 753 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-227ENST00000557269 TMEM161BQ8NDZ6 487 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 DEPTORQ8TB45 409 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 NFKBIZQ9BYH8 718 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 CCDC113Q9H0I3 377 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 TMX1Q9H3N1 280 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 CLSTN2Q9H4D0 955 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 KMT5AQ9NQR1 393 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 LARSQ9P2J5 1176 aaKnown RBP14.15□□□□□ -0.14
SHMT2-227ENST00000557269 ARHGAP28Q9P2N2 729 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 PCDHA5Q9Y5H7 936 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 NR2E3Q9Y5X4 410 aa14.15□□□□□ -0.14
SHMT2-227ENST00000557269 INO80B-WBP1J3KQ70 363 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 B4GALT5O43286 388 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 RPS6KA5O75582 802 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 CXCL10P02778 98 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 MYL1P05976 194 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 GAP43P17677 238 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 SARSP49591 514 aaKnown RBP14.14□□□□□ -0.15
SHMT2-227ENST00000557269 NCKAP1LP55160 1127 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 NFKBIBQ15653 356 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 AMHR2Q16671 573 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 TSHZ1Q6ZSZ6 1077 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 ZNF720Q7Z2F6 126 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 HAUS6Q7Z4H7 955 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 SRGAP1Q7Z6B7 1085 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 FAM178BQ8IXR5 827 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 ZNF710Q8N1W2 664 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 TMEM199Q8N511 208 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 SPATA20Q8TB22 786 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 INO80BQ9C086 356 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-227ENST00000557269 IKZF4Q9H2S9 585 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 ERVK-5Q9HDB9 667 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 PADI3Q9ULW8 664 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 ST3GAL5Q9UNP4 418 aa14.14□□□□□ -0.15
SHMT2-227ENST00000557269 DENND3A2RUS2 1198 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 K7ENM7 598 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 PPP1R37O75864 691 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 MYBP10242 640 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 MAPTP10636 758 aaKnown RBP14.13□□□□□ -0.15
SHMT2-227ENST00000557269 FPGSQ05932 587 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 KCNA1Q09470 495 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 NFX1Q12986 1120 aaKnown RBP14.13□□□□□ -0.15
SHMT2-227ENST00000557269 PLEKHG4Q58EX7 1191 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 DBF4BQ8NFT6 615 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 STRA6Q9BX79 667 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 FZD8Q9H461 694 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 MRPL44Q9H9J2 332 aaKnown RBP14.13□□□□□ -0.15
SHMT2-227ENST00000557269 OLFML3Q9NRN5 406 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 SEL1LQ9UBV2 794 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 SQORQ9Y6N5 450 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 MYH11P35749 1972 aa14.13□□□□□ -0.15
SHMT2-227ENST00000557269 K7ERI5 159 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 MGEA5O60502 916 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 TSPAN1O60635 241 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 MBD3O95983 291 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 HOXA11P31270 313 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-227ENST00000557269 RFC2P35250 354 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 MAGEA10P43363 369 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-227ENST00000557269 SMTNP53814 917 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 MLLT1Q03111 559 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-227ENST00000557269 STK4Q13043 487 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 PAK2Q13177 524 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 FAM26FQ5R3K3 315 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 NT5DC1Q5TFE4 455 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 ISM2Q6H9L7 571 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 RTN4RL1Q86UN2 441 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-227ENST00000557269 ZBTB8OSQ8IWT0 167 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 USP38Q8NB14 1042 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 KIAA0895Q8NCT3 520 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 IFIH1Q9BYX4 1025 aaKnown RBP14.12□□□□□ -0.15
SHMT2-227ENST00000557269 NUP62CLQ9H1M0 184 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 C2orf40Q9H1Z8 148 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 ST6GALNAC4Q9H4F1 302 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 TMEM134Q9H6X4 195 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 SLC39A2Q9NP94 309 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 IL23AQ9NPF7 189 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 EXOC1Q9NV70 894 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 TMEM63CQ9P1W3 806 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 MAN1B1Q9UKM7 699 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 TET1Q8NFU7 2136 aa14.12□□□□□ -0.15
SHMT2-227ENST00000557269 TNRC18O15417 2968 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 GPR182O15218 404 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 PRPF6O94906 941 aaKnown RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 RHOBTB3O94955 611 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 GCNT3O95395 438 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 PARNO95453 639 aaKnown RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 PRKCBP05771 671 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 ARF4P18085 180 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 BMP6P22004 513 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 SFPQP23246 707 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 HOXD13P35453 343 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 EFNA5P52803 228 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms