RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 STC2O76061 302 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 PCDH8O95206 1070 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 ADH4P08319 380 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 MAKP20794 623 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 SMAD3P84022 425 aaKnown RBP5.23□□□□□ -1.57
VPS13A-213ENST00000539950 C1QL3Q5VWW1 255 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 CNNM4Q6P4Q7 775 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 LDLRAD3Q86YD5 345 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 ZZZ3Q8IYH5 903 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 CMTM4Q8IZR5 234 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 EFHBQ8N7U6 833 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 PGBD4Q96DM1 585 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 CLIP3Q96DZ5 547 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 CEP89Q96ST8 783 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 OSBPL6Q9BZF3 934 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 THG1LQ9NWX6 298 aaKnown RBP5.23□□□□□ -1.57
VPS13A-213ENST00000539950 GPRC5BQ9NZH0 403 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 WDR33Q9C0J8 1336 aaKnown RBP5.23□□□□□ -1.57
VPS13A-213ENST00000539950 LCHNA4D1U4 455 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 FAM20BO75063 409 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 GAAP10253 952 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 CD40P25942 277 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 SPIDRQ14159 915 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 PCBP1Q15365 356 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS13A-213ENST00000539950 ZBTB41Q5SVQ8 909 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 HOMER1Q86YM7 354 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 MB21D1Q8N884 522 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 ATXN2LQ8WWM7 1075 aaKnown RBP5.22□□□□□ -1.57
VPS13A-213ENST00000539950 NINJ1Q92982 152 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 ARL8AQ96BM9 186 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 ZNF496Q96IT1 587 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-213ENST00000539950 FANCLQ9NW38 375 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS13A-213ENST00000539950 ING3Q9NXR8 418 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 MYPNQ86TC9 1320 aa5.22□□□□□ -1.57
VPS13A-213ENST00000539950 MTSS1O43312 755 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 RPS6KA4O75676 772 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 PEX11BO96011 259 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 CFBP00751 764 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 INHBCP55103 352 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 NPEPPSP55786 919 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 CD69Q07108 199 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 LRRC32Q14392 662 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 SEPT7Q16181 437 aaKnown RBP5.21□□□□□ -1.58
VPS13A-213ENST00000539950 MFSD5Q6N075 450 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 Q6ZPA2 131 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 ZNF662Q6ZS27 426 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 C16orf86Q6ZW13 317 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 HTR3DQ70Z44 454 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 PIK3C3Q8NEB9 887 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 MDGA1Q8NFP4 955 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 PPP1R14CQ8TAE6 165 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 HIST1H2AHQ96KK5 128 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 UIMC1Q96RL1 719 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 MNTQ99583 582 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 HIST1H2AJQ99878 128 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 MS4A5Q9H3V2 200 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 C11orf21Q9P2W6 132 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 MSRAQ9UJ68 235 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 PCDHB6Q9Y5E3 794 aa5.21□□□□□ -1.58
VPS13A-213ENST00000539950 A0A087X1B8 175 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 MAFGO15525 162 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 MFAP3LO75121 409 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 FSBPO95073 299 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 KRT4P19013 534 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 MAN2A1Q16706 1144 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 FAM214AQ32MH5 1076 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 ESPNLQ6ZVH7 1005 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 PASD1Q8IV76 773 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 DHX37Q8IY37 1157 aaKnown RBP5.2□□□□□ -1.58
VPS13A-213ENST00000539950 NIM1KQ8IY84 436 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 SMC1BQ8NDV3 1235 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 APPBP2Q92624 585 aa5.2□□□□□ -1.58
VPS13A-213ENST00000539950 GRXCR1A8MXD5 290 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 ALDH1A2O94788 518 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 LY86O95711 162 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 PFKMP08237 780 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 KPNA1P52294 538 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-213ENST00000539950 RABL3Q5HYI8 236 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 PCSK4Q6UW60 755 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 ST8SIA2Q92186 375 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 FERMT2Q96AC1 680 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 GPR101Q96P66 508 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-213ENST00000539950 FDXACB1Q9BRP7 624 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-213ENST00000539950 TARS2Q9BW92 718 aaKnown RBP5.19□□□□□ -1.58
VPS13A-213ENST00000539950 ENKD1Q9H0I2 346 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 SPTLC3Q9NUV7 552 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 USP36Q9P275 1121 aaKnown RBP5.19□□□□□ -1.58
VPS13A-213ENST00000539950 TRPS1Q9UHF7 1281 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 USP18Q9UMW8 372 aa5.19□□□□□ -1.58
VPS13A-213ENST00000539950 HOXA3O43365 443 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-213ENST00000539950 IPO13O94829 963 aaKnown RBP5.18□□□□□ -1.58
VPS13A-213ENST00000539950 GNAT2P19087 354 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 HK1P19367 917 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 PTTG1IPP53801 180 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 PHC1P78364 1004 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 SMN1Q16637 294 aaKnown RBP5.18□□□□□ -1.58
VPS13A-213ENST00000539950 MRGPRGQ86SM5 289 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 ULK2Q8IYT8 1036 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 UNC5BQ8IZJ1 945 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms