RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ECM1Q16610 540 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 FAM160B1Q5W0V3 765 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 KCNK18Q7Z418 384 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 ATP8B4Q8TF62 1192 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 CDX2Q99626 313 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 GTPBP4Q9BZE4 634 aaKnown RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 NKX2-4Q9H2Z4 354 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 ZNF576Q9H609 170 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 MAFBQ9Y5Q3 323 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 KDM3AQ9Y4C1 1321 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TRIM49BA6NDI0 452 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 WDR64B1ANS9 1081 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 NRDCO43847 1150 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 ARHGEF15O94989 841 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 PSAPP07602 524 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 SPAG1Q07617 926 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 HYIQ5T013 277 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TAF2Q6P1X5 1199 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 CNKSR3Q6P9H4 555 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 SMAP1Q8IYB5 467 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 RIT2Q99578 217 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TEKT3Q9BXF9 490 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 NT5C3AQ9H0P0 336 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TANC1Q9C0D5 1861 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 RRN3P2A6NIE6 340 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 TEX33O43247 280 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 GHRP10912 638 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 KLRC1P26715 233 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 PMS1P54277 932 aaKnown RBP13.16□□□□□ -0.3
CLIP1-208ENST00000537004 STK4Q13043 487 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 FILIP1LQ4L180 1135 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 FAM117BQ6P1L5 589 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 CNNM4Q6P4Q7 775 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 MTHFD1LQ6UB35 978 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 SPRED2Q7Z698 418 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 MYLIPQ8WY64 445 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 DHTKD1Q96HY7 919 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-208ENST00000537004 SH2D3AQ9BRG2 576 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 LRRC27Q9C0I9 530 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 LIMA1Q9UHB6 759 aaKnown RBP13.16□□□□□ -0.3
CLIP1-208ENST00000537004 MUC3AQ02505 3323 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 WDR81Q562E7 1941 aa13.16□□□□□ -0.3
CLIP1-208ENST00000537004 PVALEFA0A1B0GWK0 134 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 TMEM150BA6NC51 233 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KCNJ18B7U540 433 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 EML1O00423 815 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 SLC26A4O43511 780 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 HBP1O60381 514 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 PARNO95453 639 aaKnown RBP13.15□□□□□ -0.3
CLIP1-208ENST00000537004 CA3P07451 260 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KCNJ6P48051 423 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 SLC26A2P50443 739 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 SPIRE1Q08AE8 756 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KCNJ12Q14500 433 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KRT31Q15323 416 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 PLEKHG4Q58EX7 1191 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 TCP11X2Q5H9J9 407 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 B3GNT9Q6UX72 402 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 UNC13DQ70J99 1090 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 DYMQ7RTS9 669 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 HERC6Q8IVU3 1022 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 CCDC112Q8NEF3 446 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 ANKRD20A12PQ8NF67 263 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 FAM20AQ96MK3 541 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 PPP1R16BQ96T49 567 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 MSRAQ9UJ68 235 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 CDY2AQ9Y6F7 541 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 LRRC10BA6NIK2 292 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 USP27XA6NNY8 438 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 BAIAP3O94812 1187 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 PPP1R2P41236 205 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 TERF1P54274 439 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 GOLGA8FQ08AF8 430 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 MGAT3Q09327 533 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 GOLGA8DPQ0D2H9 430 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 IKBKEQ14164 716 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 TTI2Q6NXR4 508 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KIAA0895Q8NCT3 520 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 DDX12PQ92771 950 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 C16orf45Q96MC5 204 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-208ENST00000537004 IFIH1Q9BYX4 1025 aaKnown RBP13.15□□□□□ -0.3
CLIP1-208ENST00000537004 CERS4Q9HA82 394 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KCND1Q9NSA2 647 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 KIAA1024Q9UPX6 916 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 GINS2Q9Y248 185 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 PCDHA2Q9Y5H9 948 aa13.15□□□□□ -0.3
CLIP1-208ENST00000537004 IGSF9BQ9UPX0 1349 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 LCHNA4D1U4 455 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 CAND2O75155 1236 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 PBX1P40424 430 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 PRKCEQ02156 737 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 LPIN1Q14693 890 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 COBLL1Q53SF7 1204 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 FAM26DQ5JW98 314 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 HAUS3Q68CZ6 603 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 MIER3Q7Z3K6 550 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 RPAINQ86UA6 219 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 IRF2BP1Q8IU81 584 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 CCAR2Q8N163 923 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms