RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 HAUS6Q7Z4H7 955 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 RIOX2Q8IUF8 465 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 MAP4K3Q8IVH8 894 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 KRT222Q8N1A0 295 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 MMGT1Q8N4V1 131 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 PROCA1Q8NCQ7 364 aaPredicted RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 SLC30A5Q8TAD4 765 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 LMO3Q8TAP4 145 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 ATP6V0A1Q93050 837 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 CALR3Q96L12 384 aaKnown RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 FBXL18Q96ME1 805 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 ARFGAP3Q9NP61 516 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 A1CFQ9NQ94 594 aaKnown RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 TCEAL9Q9UHQ7 104 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 EXOC7Q9UPT5 735 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 HYOU1Q9Y4L1 999 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 SNCAIPQ9Y6H5 919 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 LCTP09848 1927 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 PTPRFP10586 1907 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 IGKV6D-21A0A0A0MT36 114 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 CXCL11O14625 94 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 ERLIN1O75477 346 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 EIF3JO75822 258 aaKnown RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 PSAPP07602 524 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 PNMA6AP0CW24 399 aaPredicted RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 MYCLP12524 364 aaPredicted RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 EDNRBP24530 442 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 STAT1P42224 750 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 PTK2Q05397 1052 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 RAPGEF1Q13905 1077 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 IFI16Q16666 785 aaKnown RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 UGCGQ16739 394 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 TDRD12Q587J7 1177 aaKnown RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 ANO5Q75V66 913 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 VPS36Q86VN1 386 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 CREG2Q8IUH2 290 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 XXYLT1Q8NBI6 393 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 TMEM161BQ8NDZ6 487 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 MCPH1Q8NEM0 835 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 OLIG1Q8TAK6 271 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 SLC10A4Q96EP9 437 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 ZFP91Q96JP5 570 aaPredicted RBP11.7□□□□□ -0.54
USP4-214ENST00000491791 SPAG5Q96R06 1193 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 CFHR5Q9BXR6 569 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 HOMER2Q9NSB8 354 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 GCNT4Q9P109 453 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 APEX2Q9UBZ4 518 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 SALL4Q9UJQ4 1053 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 TFR2Q9UP52 801 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 PPME1Q9Y570 386 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 CAPN6Q9Y6Q1 641 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 WDR81Q562E7 1941 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 ARID2Q68CP9 1835 aa11.7□□□□□ -0.54
USP4-214ENST00000491791 IGSF9BQ9UPX0 1349 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 LOC102724159A0A0B4J2E5 919 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 MACROD2A1Z1Q3 448 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 MANSC4A6NHS7 340 aaPredicted RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 UNCXA6NJT0 531 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 K7ENM7 598 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 DDX39AO00148 427 aaKnown RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 BACH1O14867 736 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 EXOC3O60645 756 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 DGAT1O75907 488 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 ACTN1P12814 892 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 KRT13P13646 458 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 GTF2H1P32780 548 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 COPB2P35606 906 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SOX5P35711 763 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SMTNP53814 917 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 PPATQ06203 517 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 KIF22Q14807 665 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 PWP2Q15269 919 aaKnown RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 EPC2Q52LR7 807 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 BEND6Q5SZJ8 279 aaPredicted RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 LDLRAD1Q5T700 205 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SPRYD7Q5W111 196 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SAMD1Q6SPF0 538 aaPredicted RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 ZNF571Q7Z3V5 609 aaPredicted RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 SYCP3Q8IZU3 236 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 FAM133AQ8N9E0 248 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 TMC2Q8TDI7 906 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 MFSD14AQ96MC6 490 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 MMS19Q96T76 1030 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 TLR10Q9BXR5 811 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 FUT8Q9BYC5 575 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 MLXIPQ9HAP2 919 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 HDAC6Q9UBN7 1215 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SLC9A2Q9UBY0 812 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 ADAMTS1Q9UHI8 967 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 PUF60Q9UHX1 559 aaKnown RBP11.69□□□□□ -0.54
USP4-214ENST00000491791 NAGPAQ9UK23 515 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 TBX20Q9UMR3 447 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 L1RE1Q9UN81 338 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 COQ4Q9Y3A0 265 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 SAMM50Q9Y512 469 aa11.69□□□□□ -0.54
USP4-214ENST00000491791 TESPA1A2RU30 521 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 GRID2IPA4D2P6 1211 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 F8VZ95 297 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 ENC1O14682 589 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 KIAA0391O15091 583 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms