RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 HDAC6Q9UBN7 1215 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 PUF60Q9UHX1 559 aaKnown RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 NOL7Q9UMY1 257 aaKnown RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 KIAA1217Q5T5P2 1943 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 TECTAO75443 2155 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 PIK3R2O00459 728 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 SCAMP3O14828 347 aaKnown RBP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ORC4O43929 436 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ARIH2O95376 493 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 NOVP48745 357 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 PSMC1P62191 440 aaKnown RBP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ARHGAP1Q07960 439 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 COL19A1Q14993 1142 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ZKSCAN8Q15776 578 aaPredicted RBP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 STXBP2Q15833 593 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 HIF1AQ16665 826 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 LY6KQ17RY6 165 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 KIAA0753Q2KHM9 967 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 TCEAL5Q5H9L2 206 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ZNF618Q5T7W0 954 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 HFE2Q6ZVN8 426 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 RASGRP2Q7LDG7 609 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 TMEM192Q8IY95 271 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 DBF4BQ8NFT6 615 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 NSUN6Q8TEA1 469 aaKnown RBP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 TNFRSF25Q93038 417 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 C8orf48Q96LL4 319 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 IWS1Q96ST2 819 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 YME1L1Q96TA2 773 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 CASS4Q9NQ75 786 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 TOMM22Q9NS69 142 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 CLDND1Q9NY35 253 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 CACNA1HO95180 2353 aa7.77□□□□□ -1.17
HDAC3-209ENST00000486618 FRMPD2Q68DX3 1309 aaPredicted RBP7.77□□□□□ -1.17
HDAC3-209ENST00000486618 ADARB2-AS1A8MUL3 147 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 RSPH10B2B2RC85 870 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 HAS3O00219 553 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 MSTNO14793 375 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 DNAJC6O75061 913 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 LDHAP00338 332 aaKnown RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 FGAP02671 866 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 PROCP04070 461 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 RB1P06400 928 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 RSPH10BP0C881 870 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 WEE1P30291 646 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 HNRNPUQ00839 825 aaKnown RBP eCLIP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 SMAD2Q15796 467 aaKnown RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TCTN1Q2MV58 587 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TRIM71Q2Q1W2 868 aaKnown RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 USH1GQ495M9 461 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 PLEKHG4Q58EX7 1191 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 HERC4Q5GLZ8 1057 aaPredicted RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 ZMYM1Q5SVZ6 1142 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 GPATCH4Q5T3I0 446 aaKnown RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 BMP8AQ7Z5Y6 402 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 ZSCAN30Q86W11 494 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 FBXO11Q86XK2 927 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 MCF2L2Q86YR7 1114 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 ZNF513Q8N8E2 541 aaPredicted RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 PPTC7Q8NI37 304 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 SEPT8Q92599 483 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TOP1MTQ969P6 601 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TTC14Q96N46 770 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 SEC62Q99442 399 aaKnown RBP7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TMEM47Q9BQJ4 181 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 FSD1Q9BTV5 496 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 LMAN2LQ9H0V9 348 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TCP11L1Q9NUJ3 509 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 RWDD3Q9Y3V2 267 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 NLRC5Q86WI3 1866 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 KAT6AQ92794 2004 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 TTC41PQ6P2S7 1318 aa7.76□□□□□ -1.17
HDAC3-209ENST00000486618 RALGAPA2Q2PPJ7 1873 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SOWAHDA6NJG2 315 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 F2P00734 622 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 FGRP09769 529 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 PDHBP11177 359 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 ALAS2P22557 587 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 THPOP40225 353 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 ZNF543Q08ER8 600 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 MBTPS1Q14703 1052 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SUZ12Q15022 739 aaKnown RBP7.75□□□□□ -1.17
HDAC3-209ENST00000486618 ENOX2Q16206 610 aaKnown RBP7.75□□□□□ -1.17
HDAC3-209ENST00000486618 MAP9Q49MG5 647 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 RRP12Q5JTH9 1297 aaKnown RBP7.75□□□□□ -1.17
HDAC3-209ENST00000486618 ARHGEF16Q5VV41 709 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 TAF3Q5VWG9 929 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 IER5Q5VY09 327 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 KCNV1Q6PIU1 500 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SERINC5Q86VE9 423 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SUGP1Q8IWZ8 645 aaKnown RBP7.75□□□□□ -1.17
HDAC3-209ENST00000486618 TTC30BQ8N4P2 665 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 FIBCD1Q8N539 461 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SVIPQ8NHG7 77 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 FAM200AQ8TCP9 573 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 SYTL5Q8TDW5 730 aaPredicted RBP7.75□□□□□ -1.17
HDAC3-209ENST00000486618 EDAQ92838 391 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 PPP2R3CQ969Q6 453 aa7.75□□□□□ -1.17
HDAC3-209ENST00000486618 TAAR1Q96RJ0 339 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms