RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NLRP9Q7RTR0 991 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 SYNE4Q8N205 404 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 CCDC89Q8N998 374 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 MTBPQ96DY7 904 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 DUSP9Q99956 384 aaKnown RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 FAM217BQ9NTX9 383 aaPredicted RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 SLC12A6Q9UHW9 1150 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 SALL4Q9UJQ4 1053 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 NAGPAQ9UK23 515 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 MEIS1O00470 390 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 UCHL3P15374 230 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 CA8P35219 290 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 ASPHQ12797 758 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 PICALMQ13492 652 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 P3H1Q32P28 736 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 LRRC74BQ6ZQY2 392 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 IRF2BP1Q8IU81 584 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 CCNJLQ8IV13 435 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 FAM186BQ8IYM0 893 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 CXorf38Q8TB03 319 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 XAB2Q9HCS7 855 aaKnown RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 DMAP1Q9NPF5 467 aaPredicted RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 DNAJC12Q9UKB3 198 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 MIF4GDA9UHW6 222 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 INHBAP08476 426 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 RARAP10276 462 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 ZFXP17010 805 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 POLGP54098 1239 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 ESRRGP62508 458 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 C16orf87Q6PH81 154 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TRMT10CQ7L0Y3 403 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 KRT28Q7Z3Y7 464 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PROM2Q8N271 834 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 OGFOD1Q8N543 542 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 SPATA20Q8TB22 786 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CABLES1Q8TDN4 633 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CENPTQ96BT3 561 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PGM2Q96G03 612 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 ROPN1BQ9BZX4 212 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CCSER1Q9C0I3 900 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 ROPN1Q9HAT0 212 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PIDD1Q9HB75 910 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CLIC5Q9NZA1 410 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 ANKARQ7Z5J8 1434 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 SETD1BQ9UPS6 1966 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 EFCAB6Q5THR3 1501 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 AFF2P51816 1311 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 MAP3K15Q6ZN16 1313 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CAMSAP1Q5T5Y3 1602 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PVALEFA0A1B0GWK0 134 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PHF2O75151 1096 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 MAPK4P31152 587 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CTSWP56202 376 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 COASYQ13057 564 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 CNGA2Q16280 664 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TMEM132AQ24JP5 1023 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 DAB2IPQ5VWQ8 1189 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 LRGUKQ96M69 825 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 KLF6Q99612 283 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 KIAA1683Q9H0B3 1180 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 NEUROG2Q9H2A3 272 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 SEMA6BQ9H3T3 888 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 OSGEPQ9NPF4 335 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 MLH3Q9UHC1 1453 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TPD52L2O43399 206 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 PDE8AO60658 829 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 RTN2O75298 545 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 YWHAGP61981 247 aaKnown RBP eCLIP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TMPRSS15P98073 1019 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 SLC34A1Q06495 639 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 NCAPD2Q15021 1401 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 R3HDM1Q15032 1099 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 RBM26Q5T8P6 1007 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 GALNT17Q6IS24 598 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 NRKQ7Z2Y5 1582 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 RHOT2Q8IXI1 618 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 FITM2Q8N6M3 262 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 DRAXINQ8NBI3 349 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TRAIPQ9BWF2 469 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 UBE2TQ9NPD8 197 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 TXNDC16Q9P2K2 825 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 SUCLA2Q9P2R7 463 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 HEY2Q9UBP5 337 aa9.94□□□□□ -0.82
COL28A1-201ENST00000399429 DDX25Q9UHL0 483 aaKnown RBP9.94□□□□□ -0.82
COL28A1-201ENST00000399429 MYMKA6NI61 221 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 FTLP02792 175 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-201ENST00000399429 PTPN4P29074 926 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 PIK3CAP42336 1068 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 FAM118BQ9BPY3 351 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 TRIM56Q9BRZ2 755 aaKnown RBP9.93□□□□□ -0.82
COL28A1-201ENST00000399429 PAGR1Q9BTK6 254 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 ANKFY1Q9P2R3 1169 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 SUGT1Q9Y2Z0 365 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 CD163L1Q9NR16 1453 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 E7ENQ6 273 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 SGK1O00141 431 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 CFLARO15519 480 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 TTLL1O95922 423 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 PYGBP11216 843 aa9.93□□□□□ -0.82
COL28A1-201ENST00000399429 NCF2P19878 526 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms