RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SPDYE6P0CI01 402 aa14.12□□□□□ -0.15
COL6A3-202ENST00000347401 SERPINB9P50453 376 aa14.12□□□□□ -0.15
COL6A3-202ENST00000347401 PRPF18Q99633 342 aaKnown RBP14.12□□□□□ -0.15
COL6A3-202ENST00000347401 LRRC4Q9HBW1 653 aa14.12□□□□□ -0.15
COL6A3-202ENST00000347401 SLC24A3Q9HC58 644 aa14.12□□□□□ -0.15
COL6A3-202ENST00000347401 UBE2TQ9NPD8 197 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-202ENST00000347401 CPSF1Q10570 1443 aaKnown RBP14.12□□□□□ -0.15
COL6A3-202ENST00000347401 NR1H4Q96RI1 486 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-202ENST00000347401 RANBP17Q9H2T7 1088 aaKnown RBP14.12□□□□□ -0.15
COL6A3-202ENST00000347401 MAGEA13PA6NCF6 341 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 PPIP5K2O43314 1243 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 LRRN2O75325 713 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 SF3A3Q12874 501 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL6A3-202ENST00000347401 BRD8Q9H0E9 1235 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 ASCC2Q9H1I8 757 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-202ENST00000347401 AP3M2P53677 418 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 SLC7A5Q01650 507 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 TMEM191CA6NGB0 347 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 EIF2S1P05198 315 aaKnown RBP14.11□□□□□ -0.15
COL6A3-202ENST00000347401 KMT5AQ9NQR1 393 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 MAP3K15Q6ZN16 1313 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 LSP1P33241 339 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 CENPPQ6IPU0 288 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 MCUQ8NE86 351 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 EMILIN3Q9NT22 766 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 SCN3BQ9NY72 215 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 CAB39Q9Y376 341 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-202ENST00000347401 PREX2Q70Z35 1606 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 KIAA1210Q9ULL0 1709 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 IMPG1Q17R60 797 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 TRIM16LQ309B1 348 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 MAEAQ7L5Y9 396 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 AP3B2Q13367 1082 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 SLC39A6Q13433 755 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 P3H1Q32P28 736 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 RCSD1Q6JBY9 416 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 FAM89AQ96GI7 184 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 GINS4Q9BRT9 223 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 TUBGCP4Q9UGJ1 667 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 STX3Q13277 289 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 KBTBD12Q3ZCT8 623 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 PPP6R3Q5H9R7 873 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-202ENST00000347401 PASD1Q8IV76 773 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 FAM9CQ8IZT9 166 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 KRT35Q92764 455 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 CATSPER2Q96P56 530 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 USP44Q9H0E7 712 aa14.11□□□□□ -0.15
COL6A3-202ENST00000347401 JAK3P52333 1124 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 SLC26A7Q8TE54 656 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ZFRQ96KR1 1074 aaKnown RBP14.1□□□□□ -0.15
COL6A3-202ENST00000347401 HDLBPQ00341 1268 aaKnown RBP14.1□□□□□ -0.15
COL6A3-202ENST00000347401 SIX6OS1Q8N1H7 587 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 MCPH1Q8NEM0 835 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ANKRD7Q92527 254 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 MLXIPQ9HAP2 919 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-202ENST00000347401 APPL1Q9UKG1 709 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 KCNQ4P56696 695 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 MECOMQ03112 1051 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 IQGAP3Q86VI3 1631 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 GOLGA8FQ08AF8 430 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 GOLGA8DPQ0D2H9 430 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 RHOT1Q8IXI2 618 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 DCLK2Q8N568 766 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 RFFLQ8WZ73 363 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 STAMQ92783 540 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 SIKE1Q9BRV8 207 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ATP10BO94823 1461 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 FTCDO95954 541 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 POLD1P28340 1107 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 MAP3K19Q56UN5 1328 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 TJAP1Q5JTD0 557 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 DDX39AO00148 427 aaKnown RBP14.1□□□□□ -0.15
COL6A3-202ENST00000347401 RABGAP1LQ5R372 815 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 HDDC2Q7Z4H3 204 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 TMEM35BQ8NCS4 154 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 CNGB3Q9NQW8 809 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ZAP70P43403 619 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 ZNF827Q17R98 1081 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 PAGE5Q96GU1 130 aa14.1□□□□□ -0.15
COL6A3-202ENST00000347401 OLA1Q9NTK5 396 aaKnown RBP14.1□□□□□ -0.15
COL6A3-202ENST00000347401 KIAA0391O15091 583 aaKnown RBP14.09□□□□□ -0.15
COL6A3-202ENST00000347401 BBS9Q3SYG4 887 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 ZNF577Q9BSK1 485 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 TIPINQ9BVW5 301 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 CCDC90BQ9GZT6 254 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 ANAPC7Q9UJX3 599 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 KRT72Q14CN4 511 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 ELOA2Q8IYF1 753 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-202ENST00000347401 BEGAINQ9BUH8 593 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 PVALEFA0A1B0GWK0 134 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 PLCG1P19174 1290 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 ADD1P35611 737 aaKnown RBP14.09□□□□□ -0.15
COL6A3-202ENST00000347401 KCNB1Q14721 858 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 ADCK5Q3MIX3 580 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 LRRC8EQ6NSJ5 796 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 SUCLG2Q96I99 432 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 PLEKHA4Q9H4M7 779 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 DCLRE1BQ9H816 532 aa14.09□□□□□ -0.15
COL6A3-202ENST00000347401 SAC3D1A6NKF1 404 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms