RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CENPFP49454 3210 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 RSPH10B2B2RC85 870 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 NOP56O00567 594 aaKnown RBP18.36■□□□□ 0.53
CPSF4-201ENST00000292476 RSPH10BP0C881 870 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 SCP2P22307 547 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 HOXD10P28358 340 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 CKAP4Q07065 602 aaKnown RBP18.36■□□□□ 0.53
CPSF4-201ENST00000292476 IRF5Q13568 498 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 ZCWPW2Q504Y3 356 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 ANO5Q75V66 913 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 EEPD1Q7L9B9 569 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 CCDC60Q8IWA6 550 aaPredicted RBP18.36■□□□□ 0.53
CPSF4-201ENST00000292476 DHX37Q8IY37 1157 aaKnown RBP18.36■□□□□ 0.53
CPSF4-201ENST00000292476 EXOC8Q8IYI6 725 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 GOLGA5Q8TBA6 731 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 AFAP1L1Q8TED9 768 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 KIFAP3Q92845 792 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 FAM167AQ96KS9 214 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 NDST4Q9H3R1 872 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 AGPAT5Q9NUQ2 364 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 GUCA1BQ9UMX6 200 aa18.36■□□□□ 0.53
CPSF4-201ENST00000292476 USO1O60763 962 aaKnown RBP18.35■□□□□ 0.53
CPSF4-201ENST00000292476 SASH3O75995 380 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 LCA5LO95447 670 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 ABL1P00519 1130 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 TXNP10599 105 aaKnown RBP18.35■□□□□ 0.53
CPSF4-201ENST00000292476 PLS3P13797 630 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 SLC26A2P50443 739 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 VAV2P52735 878 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 PRKCEQ02156 737 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 WDR93Q6P2C0 686 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 LRRC55Q6ZSA7 311 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 ZNF720Q7Z2F6 126 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 TXLNBQ8N3L3 684 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 EPC1Q9H2F5 836 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 KCTD10Q9H3F6 313 aa18.35■□□□□ 0.53
CPSF4-201ENST00000292476 TYW1Q9NV66 732 aaKnown RBP18.35■□□□□ 0.53
CPSF4-201ENST00000292476 ZNFX1Q9P2E3 1918 aaKnown RBP18.35■□□□□ 0.53
CPSF4-201ENST00000292476 CETN3O15182 167 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 OATP04181 439 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 STAT5BP51692 787 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 SMTNP53814 917 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 RTP1P59025 263 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 GPS2Q13227 327 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 LY6KQ17RY6 165 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 BEND6Q5SZJ8 279 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 CCDC62Q6P9F0 684 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 HDXQ7Z353 690 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 NELFCDQ8IXH7 590 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 PCMTD1Q96MG8 357 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 ST6GALNAC4Q9H4F1 302 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 TMEM206Q9H813 350 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 SEPT9Q9UHD8 586 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 SAR1BQ9Y6B6 198 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 LRRC37A2A6NM11 1700 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 GSTTP1A0A1W2PQM5 241 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 RBM47A0AV96 593 aaKnown RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 H0YCG3 227 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 ZNF862O60290 1169 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 FLT3LGP49771 235 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 LAMC2Q13753 1193 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 SPA17Q15506 151 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 NFIL3Q16649 462 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 FBXO16Q8IX29 292 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 GLIS3Q8NEA6 775 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 RAET1EQ8TD07 263 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 NIFKQ9BYG3 293 aaKnown RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 NUCKS1Q9H1E3 243 aaKnown RBP18.34■□□□□ 0.53
CPSF4-201ENST00000292476 CYP26B1Q9NR63 512 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 PLXNB2O15031 1838 aa18.34■□□□□ 0.53
CPSF4-201ENST00000292476 SFI1A8K8P3 1242 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 STBD1O95210 358 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 MYBP10242 640 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 TCF7P36402 384 aaPredicted RBP18.33■□□□□ 0.52
CPSF4-201ENST00000292476 PRMT2P55345 433 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 SNRPFP62306 86 aaKnown RBP18.33■□□□□ 0.52
CPSF4-201ENST00000292476 MAPK7Q13164 816 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 SMC1AQ14683 1233 aaKnown RBP18.33■□□□□ 0.52
CPSF4-201ENST00000292476 SLC9C1Q4G0N8 1177 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 TAF3Q5VWG9 929 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 HS2ST1Q7LGA3 356 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 PLPPR4Q7Z2D5 763 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 ZC3H3Q8IXZ2 948 aaKnown RBP18.33■□□□□ 0.52
CPSF4-201ENST00000292476 HVCN1Q96D96 273 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 MAML3Q96JK9 1138 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 CCDC42Q96M95 316 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 ABHD16BQ9H3Z7 469 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 BCAS3Q9H6U6 928 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 ATP6V0A4Q9HBG4 840 aa18.33■□□□□ 0.52
CPSF4-201ENST00000292476 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.33■□□□□ 0.52
CPSF4-201ENST00000292476 TARSL2A2RTX5 802 aaKnown RBP18.32■□□□□ 0.52
CPSF4-201ENST00000292476 NKRFO15226 690 aaKnown RBP eCLIP18.32■□□□□ 0.52
CPSF4-201ENST00000292476 RFC5P40937 340 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 CASP5P51878 434 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 NPEPPSP55786 919 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 MARSP56192 900 aaKnown RBP18.32■□□□□ 0.52
CPSF4-201ENST00000292476 KIF5AQ12840 1032 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 ADAM9Q13443 819 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 FAM102BQ5T8I3 360 aa18.32■□□□□ 0.52
CPSF4-201ENST00000292476 PLA2G4FQ68DD2 849 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms