RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 MDM1Q8TC05 714 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 ZKSCAN4Q969J2 545 aaPredicted RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 PAWRQ96IZ0 340 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 CHP1Q99653 195 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 CCDC134Q9H6E4 229 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 RBM12Q9NTZ6 932 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 IQCA1LA6NCM1 817 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 LRRIQ4A6NIV6 560 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 GOLGA8CPA6NN73 597 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 RSPH10B2B2RC85 870 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 ERVV-1B6SEH8 477 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 GOLGA8SH3BPF8 625 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 GOLGA8MH3BSY2 632 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 RSPH10BP0C881 870 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 PLCG1P19174 1290 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 PTPREP23469 700 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 THOC5Q13769 683 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 PLEKHF1Q96S99 279 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 PKD2L2Q9NZM6 624 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 ADD3Q9UEY8 706 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 TEKT2Q9UIF3 430 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 TLR3O15455 904 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 PRCPP42785 496 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 PRPSAP1Q14558 356 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 CDHR1Q96JP9 859 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 HEMGNQ9BXL5 484 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 DHX36Q9H2U1 1008 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 KANSL2Q9H9L4 492 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 MRPL47Q9HD33 250 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 THRAP3Q9Y2W1 955 aaKnown RBP11.11□□□□□ -0.63
VCL-201ENST00000211998 L3MBTL1Q9Y468 752 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 SPATA31E1Q6ZUB1 1445 aa11.11□□□□□ -0.63
VCL-201ENST00000211998 KRT38O76015 456 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 OSBPP22059 807 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 PIK3CAP42336 1068 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ARHGDIAP52565 204 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 CC2D2BQ6DHV5 1058 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 CCDC137Q6PK04 289 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 LRRC34Q8IZ02 419 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ARL10Q8N8L6 244 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 TC2NQ8N9U0 490 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 PIGOQ8TEQ8 1089 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 SMARCAL1Q9NZC9 954 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 MAGED2Q9UNF1 606 aaPredicted RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 PCDHB4Q9Y5E5 795 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 GTPBP10A4D1E9 387 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 M0R2C6 588 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 LONRF1Q17RB8 773 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ODR4Q5SWX8 454 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 OLFML1Q6UWY5 402 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 TRIM67Q6ZTA4 783 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ARHGAP27Q6ZUM4 889 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ADNPQ9H2P0 1102 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 KDM4CQ9H3R0 1056 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 EMILIN3Q9NT22 766 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 RPAP1Q9BWH6 1393 aaPredicted RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 KPNA2P52292 529 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 DHX34Q14147 1143 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 MORF4L2Q15014 288 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 REXO1L1PQ8IX06 675 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 TRABDQ9H4I3 376 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 WDR70Q9NW82 654 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 LIMA1Q9UHB6 759 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 TTC37Q6PGP7 1564 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 TARSP26639 723 aaKnown RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 CACNA2D1P54289 1103 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 ITIH4Q14624 930 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 CCDC85BQ15834 202 aaPredicted RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 SUPT20HL1Q3ZLR7 823 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 EME1Q96AY2 570 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 CATSPER2Q96P56 530 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 FBXO2Q9UK22 296 aaPredicted RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 TTC7AQ9ULT0 858 aaPredicted RBP11.1□□□□□ -0.63
VCL-201ENST00000211998 C15orf41Q9Y2V0 281 aa11.1□□□□□ -0.63
VCL-201ENST00000211998 A6NJR5 290 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 B2RBV5 119 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 HNRNPCL2B2RXH8 293 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 PI4K2BG5E9Z4 385 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 CDR2LQ86X02 465 aaPredicted RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 TMCO5AQ8N6Q1 288 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 SNF8Q96H20 258 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 ANO3Q9BYT9 981 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 IPO11Q9UI26 975 aaKnown RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 USP6P35125 1406 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 ADD2P35612 726 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 CYP4A11Q02928 519 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 NANOGNBQ7Z5D8 188 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 DNAAF3Q8N9W5 541 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 RPS6KC1Q96S38 1066 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 CALN1Q9BXU9 219 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 RANBP17Q9H2T7 1088 aaKnown RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 DISC1Q9NRI5 854 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 TMA7Q9Y2S6 64 aaKnown RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 KDM5CP41229 1560 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 PSMD14O00487 310 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 SH2B2O14492 632 aaPredicted RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 FOXN1O15353 648 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 SERPINB2P05120 415 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 IFNAR1P17181 557 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms