RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 KRT79Q5XKE5 535 aa13.73□□□□□ -0.21
CBWD3-208ENST00000612050 SYMPKQ92797 1274 aaKnown RBP13.73□□□□□ -0.21
CBWD3-208ENST00000612050 TMEM143Q96AN5 459 aa13.73□□□□□ -0.21
CBWD3-208ENST00000612050 TMX1Q9H3N1 280 aa13.73□□□□□ -0.21
CBWD3-208ENST00000612050 BMP2KQ9NSY1 1161 aaPredicted RBP13.73□□□□□ -0.21
CBWD3-208ENST00000612050 PIN4Q9Y237 131 aaKnown RBP13.73□□□□□ -0.21
CBWD3-208ENST00000612050 PCDHB12Q9Y5F1 795 aa13.73□□□□□ -0.21
CBWD3-208ENST00000612050 MTCH2Q9Y6C9 303 aa13.73□□□□□ -0.21
CBWD3-208ENST00000612050 COL4A4P53420 1690 aaPredicted RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 LAMA2P24043 3122 aaKnown RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 VPS37CA5D8V6 355 aaPredicted RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 CARNS1A5YM72 827 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 C9IYK1 514 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 H3BNC9 293 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 CD2BP2O95400 341 aaKnown RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 EOMESO95936 686 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 BMPR1AP36894 532 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 PRPHP41219 470 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 LAMTOR4Q0VGL1 99 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 DRP2Q13474 957 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 BRAPQ7Z569 592 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 RTN4RL1Q86UN2 441 aaPredicted RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 RNF149Q8NC42 400 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 RNF169Q8NCN4 708 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 PRPF31Q8WWY3 499 aaKnown RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 LINC01599Q8WXQ3 324 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 ZNF689Q96CS4 500 aaPredicted RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 PGBD4Q96DM1 585 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 LMAN2LQ9H0V9 348 aa13.72□□□□□ -0.21
CBWD3-208ENST00000612050 WRAP73Q9P2S5 460 aaPredicted RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 DBR1Q9UK59 544 aaKnown RBP13.72□□□□□ -0.21
CBWD3-208ENST00000612050 TBKBP1A7MCY6 615 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 WNT7AO00755 349 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 MGEA5O60502 916 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 USO1O60763 962 aaKnown RBP13.71□□□□□ -0.22
CBWD3-208ENST00000612050 ARHGEF15O94989 841 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 RARRES1P49788 294 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 FERMT3Q86UX7 667 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 CATSPER3Q86XQ3 398 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 HSCBQ8IWL3 235 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 HACE1Q8IYU2 909 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 SNX29Q8TEQ0 813 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 PIGOQ8TEQ8 1089 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 ATXN2LQ8WWM7 1075 aaKnown RBP13.71□□□□□ -0.22
CBWD3-208ENST00000612050 MRPL38Q96DV4 380 aaKnown RBP13.71□□□□□ -0.22
CBWD3-208ENST00000612050 CDK5RAP3Q96JB5 506 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 CEP89Q96ST8 783 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 MRPL9Q9BYD2 267 aaKnown RBP13.71□□□□□ -0.22
CBWD3-208ENST00000612050 COG5Q9UP83 839 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 PCDHB6Q9Y5E3 794 aa13.71□□□□□ -0.22
CBWD3-208ENST00000612050 A0A0U1RQF3 1178 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 EPOPA6NHQ4 379 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 C5orf67F2Z3F1 127 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 K7ELQ4 463 aaPredicted RBP13.7□□□□□ -0.22
CBWD3-208ENST00000612050 LAG3P18627 525 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 AXLP30530 894 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 PPP2R5AQ15172 486 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 TMEM132AQ24JP5 1023 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 ECHDC2Q86YB7 292 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 KSR1Q8IVT5 923 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 ZBTB8OSQ8IWT0 167 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 LRRC43Q8N309 656 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 CLP1Q92989 425 aaKnown RBP13.7□□□□□ -0.22
CBWD3-208ENST00000612050 P2RX5Q93086 422 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 INTS4Q96HW7 963 aaKnown RBP13.7□□□□□ -0.22
CBWD3-208ENST00000612050 TMEM117Q9H0C3 514 aa13.7□□□□□ -0.22
CBWD3-208ENST00000612050 INO80B-WBP1J3KQ70 363 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 FGFR4P22455 802 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 FAM189BP81408 668 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 MRPS5P82675 430 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 POU5F1BQ06416 359 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 CUL4AQ13619 759 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 DSC3Q14574 896 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 NBR1Q14596 966 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 BMS1Q14692 1282 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 ARL6IP4Q66PJ3 421 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 KCTD17Q8N5Z5 321 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 ZNF579Q8NAF0 562 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 CNNM3Q8NE01 707 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 RASSF8Q8NHQ8 419 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 IFT74Q96LB3 600 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 TRIM6Q9C030 488 aaPredicted RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 NT5C3AQ9H0P0 336 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 C2orf40Q9H1Z8 148 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 RC3H2Q9HBD1 1191 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 AGPAT5Q9NUQ2 364 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 DNM3Q9UQ16 869 aa13.69□□□□□ -0.22
CBWD3-208ENST00000612050 MRPL42Q9Y6G3 142 aaKnown RBP13.69□□□□□ -0.22
CBWD3-208ENST00000612050 LRRIQ4A6NIV6 560 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 NCK2O43639 380 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 MED24O75448 989 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 CSDE1O75534 798 aaKnown RBP13.68□□□□□ -0.22
CBWD3-208ENST00000612050 SPATA31C1P0DKV0 1188 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 PDIA4P13667 645 aaKnown RBP13.68□□□□□ -0.22
CBWD3-208ENST00000612050 PPM1AP35813 382 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 TJAP1Q5JTD0 557 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 FAM102BQ5T8I3 360 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 NOTUMQ6P988 496 aa13.68□□□□□ -0.22
CBWD3-208ENST00000612050 POTEGQ6S5H5 508 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms