RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ARMCX2	Q7L311	632 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	GPR142	Q7Z601	462 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	CEP89	Q96ST8	783 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	TTYH3	Q9C0H2	523 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	FAM107B	Q9H098	131 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	ST6GALNAC4	Q9H4F1	302 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	PDGFC	Q9NRA1	345 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	SEPT9	Q9UHD8	586 aa	Predicted RBP	16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	PCDHB13	Q9Y5F0	798 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318		K7ENM7	598 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	OAT	P04181	439 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	FECH	P22830	423 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	SOX10	P56693	466 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	TRIM14	Q14142	442 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	GRB14	Q14449	540 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	CCDC40	Q4G0X9	1142 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	RGMB	Q6NW40	437 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	AFAP1L1	Q8TED9	768 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	HNRNPLL	Q8WVV9	542 aa	Known RBP	16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	SIK3	Q9Y2K2	1263 aa		16.86	■□□□□ 0.29
DDX39A-209	ENST00000589318	TRIM66	O15016	1216 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	DGAT1	O75907	488 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	AKAP3	O75969	853 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	TCF7	P36402	384 aa	Predicted RBP	16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	NCKAP1L	P55160	1127 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	HSDL1	Q3SXM5	330 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	FAM102B	Q5T8I3	360 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	STXBP4	Q6ZWJ1	553 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	ZNF467	Q7Z7K2	595 aa	Predicted RBP	16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	CNGA4	Q8IV77	575 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	SEPT1	Q8WYJ6	367 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	BSND	Q8WZ55	320 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	GPR20	Q99678	358 aa		16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	BAG1	Q99933	345 aa	Predicted RBP	16.85	■□□□□ 0.29
DDX39A-209	ENST00000589318	TTC26	A0AVF1	554 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	DCAF8L1	A6NGE4	600 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	MANSC4	A6NHS7	340 aa	Predicted RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	CLIC2	O15247	247 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	STX10	O60499	249 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	CP	P00450	1065 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	SLC10A3	P09131	477 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	LMAN1	P49257	510 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	CASP4	P49662	377 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	PEX3	P56589	373 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	GTF2B	Q00403	316 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	SWT1	Q5T5J6	900 aa	Known RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	TAPT1	Q6NXT6	567 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	COPS5	Q92905	334 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	FUT8	Q9BYC5	575 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	KATNBL1	Q9H079	304 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	MLXIP	Q9HAP2	919 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	AGPAT3	Q9NRZ7	376 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	DMAC2	Q9NW81	257 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	IVNS1ABP	Q9Y6Y0	642 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	MAP2K7	O14733	419 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	SASH3	O75995	380 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	ALCAM	Q13740	583 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	MTERF2	Q49AM1	385 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	TRIM65	Q6PJ69	517 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	RSRC2	Q7L4I2	434 aa	Known RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	HAUS6	Q7Z4H7	955 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	FRMD5	Q7Z6J6	570 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	KIFAP3	Q92845	792 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	BORCS6	Q96GS4	357 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	NIFK	Q9BYG3	293 aa	Known RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	GBP3	Q9H0R5	595 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	ZCCHC17	Q9NP64	241 aa	Known RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	ABHD10	Q9NUJ1	306 aa		16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	DIS3	Q9Y2L1	958 aa	Known RBP	16.84	■□□□□ 0.29
DDX39A-209	ENST00000589318	SLC16A4	O15374	487 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC16A3	O15427	465 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	LGR5	O75473	907 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	URI1	O94763	535 aa	Predicted RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	TUBB	P07437	444 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	TXN	P10599	105 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	RPL13	P26373	211 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	MAPK4	P31152	587 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	NPTX2	P47972	431 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	TARBP2	Q15633	366 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	FKBP15	Q5T1M5	1219 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	MAMDC4	Q6UXC1	1216 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CCDC91	Q7Z6B0	441 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CCDC155	Q8N6L0	562 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	LRRN4CL	Q8ND94	238 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	TMEM161B	Q8NDZ6	487 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	MCPH1	Q8NEM0	835 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	GOLGA1	Q92805	767 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CCDC51	Q96ER9	411 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	NTPCR	Q9BSD7	190 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CARD6	Q9BX69	1037 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	DHX33	Q9H6R0	707 aa	Known RBP	16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	ATP6V0A4	Q9HBG4	840 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CPA4	Q9UI42	421 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	LCMT1	Q9UIC8	334 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	CAPN11	Q9UMQ6	739 aa		16.83	■□□□□ 0.28
DDX39A-209	ENST00000589318	RBM47	A0AV96	593 aa	Known RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	FAM155A	B1AL88	458 aa	Predicted RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	ARHGAP6	O43182	974 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	STAT5B	P51692	787 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	RTP1	P59025	263 aa		16.82	■□□□□ 0.28

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms