RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GORABQ5T7V8 394 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 CREB3L3Q68CJ9 461 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 ESRP1Q6NXG1 681 aaKnown RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 MAMDC4Q6UXC1 1216 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 Q6ZSN1 163 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 ADGRE4PQ86SQ3 457 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 JAZF1Q86VZ6 243 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 RTF1Q92541 710 aaKnown RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 GPATCH3Q96I76 525 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 WDR92Q96MX6 357 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.51□□□□□ -1.69
NUP88-209ENST00000574855 THG1LQ9NWX6 298 aaKnown RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 H2AFY2Q9P0M6 372 aaPredicted RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 RBM8AQ9Y5S9 174 aaKnown RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 SBNO2Q9Y2G9 1366 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 A0A1W2PRX2 142 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 C2orf78A6NCI8 922 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 FAM83GA6ND36 823 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 ZNF891A8MT65 544 aaPredicted RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 FSHBP01225 129 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 HIBADHP31937 336 aaKnown RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 BPIFB4P59827 614 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 SMAD3P84022 425 aaKnown RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 LRRC32Q14392 662 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 PCBP1Q15365 356 aaKnown RBP eCLIP4.5□□□□□ -1.69
NUP88-209ENST00000574855 KIAA1841Q6NSI8 718 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 KANSL1Q7Z3B3 1105 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 KIAA0907Q7Z7F0 614 aaPredicted RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 SGMS1Q86VZ5 419 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 ANKRD53Q8N9V6 530 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 CHTF18Q8WVB6 975 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 NKD2Q969F2 451 aaPredicted RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 MFSD3Q96ES6 412 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 MPHOSPH9Q99550 1183 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 MYL10Q9BUA6 226 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 ZNF747Q9BV97 191 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 TARS2Q9BW92 718 aaKnown RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 VPS11Q9H270 941 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 POFUT1Q9H488 388 aa4.5□□□□□ -1.69
NUP88-209ENST00000574855 AGO3Q9H9G7 860 aaKnown RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 POLR3BQ9NW08 1133 aaPredicted RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 USP36Q9P275 1121 aaKnown RBP4.5□□□□□ -1.69
NUP88-209ENST00000574855 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.5□□□□□ -1.69
NUP88-209ENST00000574855 A0A0A6YYJ9 748 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 C6P13671 934 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 TACR2P21452 398 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 TCIRG1Q13488 830 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 RIN1Q13671 783 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 MAN2A1Q16706 1144 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 NRN1LQ496H8 165 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 GAGE13Q4V321 117 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 USP39Q53GS9 565 aaKnown RBP4.49□□□□□ -1.69
NUP88-209ENST00000574855 HSP90AB4PQ58FF6 505 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 UNQ6494/PRO21346Q6UXR6 183 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 C11orf74Q86VG3 221 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 THEMISQ8N1K5 641 aaPredicted RBP4.49□□□□□ -1.69
NUP88-209ENST00000574855 D2HGDHQ8N465 521 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 PLA2G15Q8NCC3 412 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 SMC1BQ8NDV3 1235 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 OR2W6PQ8NHA6 318 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 EXTL1Q92935 676 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 TMEM176AQ96HP8 235 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 CCDC136Q96JN2 1154 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 RPL10LQ96L21 214 aaKnown RBP4.49□□□□□ -1.69
NUP88-209ENST00000574855 PITHD1Q9GZP4 211 aaPredicted RBP4.49□□□□□ -1.69
NUP88-209ENST00000574855 HAPLN2Q9GZV7 340 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 MTG2Q9H4K7 406 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 ZMAT4Q9H898 229 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 KLHL42Q9P2K6 505 aa4.49□□□□□ -1.69
NUP88-209ENST00000574855 TMA7Q9Y2S6 64 aaKnown RBP4.49□□□□□ -1.69
NUP88-209ENST00000574855 ENPP3O14638 875 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 CYP27B1O15528 508 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 FZD7O75084 574 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 CENPBP07199 599 aaPredicted RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 LSP1P33241 339 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 STAT3P40763 770 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 GDF5P43026 501 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 SETQ01105 290 aaPredicted RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 FOXE3Q13461 319 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 SAFB2Q14151 953 aaKnown RBP eCLIP4.48□□□□□ -1.69
NUP88-209ENST00000574855 ACAP1Q15027 740 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 GPR158Q5T848 1215 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 CRIP3Q6Q6R5 217 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 RNF207Q6ZRF8 634 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 ESPNLQ6ZVH7 1005 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 USP51Q70EK9 711 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 CLEC14AQ86T13 490 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 C1orf210Q8IVY1 113 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 ZNF808Q8N4W9 903 aaPredicted RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 HIST1H2AHQ96KK5 128 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 GPR101Q96P66 508 aaPredicted RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 HIST1H2AJQ99878 128 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 NOL10Q9BSC4 688 aaKnown RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 ZNF341Q9BYN7 854 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 OSBPL6Q9BZF3 934 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 METTL14Q9HCE5 456 aaKnown RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 TLR9Q9NR96 1032 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 AURKAIP1Q9NWT8 199 aaPredicted RBP4.48□□□□□ -1.69
NUP88-209ENST00000574855 DNAI1Q9UI46 699 aa4.48□□□□□ -1.69
NUP88-209ENST00000574855 MSRAQ9UJ68 235 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms