RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 OSBPL7Q9BZF2 842 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 EP400Q96L91 3159 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 A0A0A6YYK5 440 aaPredicted RBP18.5■□□□□ 0.55
VPS53-215ENST00000573028 VPS72Q15906 364 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 CCDC25Q86WR0 208 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 SIAH1Q8IUQ4 282 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 EIF1ADQ8N9N8 165 aaKnown RBP18.5■□□□□ 0.55
VPS53-215ENST00000573028 BANK1Q8NDB2 785 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 COG5Q9UP83 839 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 PTPN22Q9Y2R2 807 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 TBX3O15119 743 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 DDX3YO15523 660 aaKnown RBP18.5■□□□□ 0.55
VPS53-215ENST00000573028 TMEM253P0C7T8 217 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 PDE4CQ08493 712 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 AGBL2Q5U5Z8 902 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 CCDC174Q6PII3 467 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 ATP8B4Q8TF62 1192 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 CRYGNQ8WXF5 182 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 CEP89Q96ST8 783 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 KLC4Q9NSK0 619 aa18.5■□□□□ 0.55
VPS53-215ENST00000573028 ZMYM2Q9UBW7 1377 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 TISP43B9A030 160 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 DNM1LO00429 736 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 MESDQ14696 234 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 UBAP2Q5T6F2 1119 aaKnown RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 GKAP1Q5VSY0 366 aaPredicted RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 SLC30A5Q8TAD4 765 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 KRT35Q92764 455 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 SH2D3AQ9BRG2 576 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 ERP44Q9BS26 406 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 SLC40A1Q9NP59 571 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 UBE2TQ9NPD8 197 aaPredicted RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 NENFQ9UMX5 172 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 ATMINO43313 823 aaPredicted RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 SLITRK3O94933 977 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 GH2P01242 217 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 IFNAR2P48551 515 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 BMT2Q1RMZ1 405 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 ABCB5Q2M3G0 1257 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 DENND2CQ68D51 928 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 MOXD1Q6UVY6 613 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 HAUS2Q9NVX0 235 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 INTUQ9ULD6 942 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 ALG6Q9Y672 507 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 FOSP01100 380 aaPredicted RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 GAP43P17677 238 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 PTENP60484 403 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 YTHDF3Q7Z739 585 aaKnown RBP18.49■□□□□ 0.55
VPS53-215ENST00000573028 CEP57Q86XR8 500 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 JAMLQ86YT9 394 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 NYAP2Q9P242 653 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 APEX2Q9UBZ4 518 aa18.49■□□□□ 0.55
VPS53-215ENST00000573028 GAS7O60861 476 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 BMP3P12645 472 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 RDXP35241 583 aaKnown RBP18.48■□□□□ 0.55
VPS53-215ENST00000573028 PMS2P54278 862 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 PHLDB3Q6NSJ2 640 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 C6orf89Q6UWU4 347 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 BORCS6Q96GS4 357 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 WDR18Q9BV38 432 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 AZI2Q9H6S1 392 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 ACP6Q9NPH0 428 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 OLFML3Q9NRN5 406 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 AGPAT3Q9NRZ7 376 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 PI4KBQ9UBF8 816 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 FTLP02792 175 aaPredicted RBP18.48■□□□□ 0.55
VPS53-215ENST00000573028 SLC29A2Q14542 456 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 NEK9Q8TD19 979 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 SCLT1Q96NL6 688 aa18.48■□□□□ 0.55
VPS53-215ENST00000573028 AHDC1Q5TGY3 1603 aaPredicted RBP18.48■□□□□ 0.55
VPS53-215ENST00000573028 OPLAHO14841 1288 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 CHN1P15882 459 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 FGFR4P22455 802 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 NPEPPSP55786 919 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 DLG4P78352 724 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 POU5F1Q01860 360 aaKnown RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 ZYXQ15942 572 aaKnown RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 CCDC38Q502W7 563 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 SP8Q8IXZ3 490 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 ATXN2Q99700 1313 aaKnown RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 GTPBP10A4D1E9 387 aaKnown RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 UBAP1LF5GYI3 381 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 JAG1P78504 1218 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 IFI35P80217 286 aaPredicted RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 PPATQ06203 517 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 KIAA1755Q5JYT7 1200 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 C1orf186Q6ZWK4 172 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 SH3BP5LQ7L8J4 393 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 CCDC91Q7Z6B0 441 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 CRAMP1Q96RY5 1269 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 POLR3CQ9BUI4 534 aaPredicted RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 USP21Q9UK80 565 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 SRCAPQ6ZRS2 3230 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 MMEP08473 750 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 ANXA13P27216 316 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 GCLMP48507 274 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 HOOK3Q86VS8 718 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 CPNE8Q86YQ8 564 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 BTBD6Q96KE9 485 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 XPO6Q96QU8 1125 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms