RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MEFVO15553 781 aaPredicted RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 UCHL3P15374 230 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 MDH1P40925 334 aaKnown RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 TRADDQ15628 312 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 DPY19L2P1Q6NXN4 242 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 POTEBQ6S5H4 581 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 ZNF571Q7Z3V5 609 aaPredicted RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 YTHDF3Q7Z739 585 aaKnown RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 ARFGAP2Q8N6H7 521 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 LRRC57Q8N9N7 239 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 LRRC45Q96CN5 670 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 RPAP3Q9H6T3 665 aaPredicted RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 ARMCX3Q9UH62 379 aaPredicted RBP14.4□□□□□ -0.11
VPS4A-204ENST00000566354 NAGPAQ9UK23 515 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 TRAF3IP3Q9Y228 551 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 PTPRFP10586 1907 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 ATP8B3O60423 1300 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 PLA2G6O60733 806 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 AFPP02771 609 aaKnown RBP14.39□□□□□ -0.11
VPS4A-204ENST00000566354 ITGB3BPQ13352 177 aaPredicted RBP14.39□□□□□ -0.11
VPS4A-204ENST00000566354 HLTFQ14527 1009 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS4A-204ENST00000566354 PTGISQ16647 500 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 CEP85LQ5SZL2 805 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 SWT1Q5T5J6 900 aaKnown RBP14.39□□□□□ -0.11
VPS4A-204ENST00000566354 CCDC174Q6PII3 467 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 MAATS1Q7Z4T9 603 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 FAM160B2Q86V87 743 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 FBXO11Q86XK2 927 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 ANKRD13AQ8IZ07 590 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 LMBR1Q8WVP7 490 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 AMNQ9BXJ7 453 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 TMBIM4Q9HC24 238 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 KCNMB3Q9NPA1 279 aa14.39□□□□□ -0.11
VPS4A-204ENST00000566354 CEP104O60308 925 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 FLOT1O75955 427 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 PRKCIP41743 596 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 SLC12A3P55017 1021 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 ERVK-9P63128 1117 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 CACNB1Q02641 598 aaPredicted RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 EXOC3L4Q17RC7 722 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 ARSHQ5FYA8 562 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 NAA35Q5VZE5 725 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 ALKBH5Q6P6C2 394 aaKnown RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 SLFN12Q8IYM2 578 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 KAT2BQ92831 832 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 OTUD5Q96G74 571 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 FAM210AQ96ND0 272 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 RANBP17Q9H2T7 1088 aaKnown RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 GGA2Q9UJY4 613 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 CYP3A7-CYP3A51PA0A087WV96 503 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 CCDC188H7C350 402 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 GCOM1H8Y6P7 765 aaPredicted RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 PGRMC1O00264 195 aaKnown RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 MYZAPP0CAP1 466 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 ACTN1P12814 892 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 SLC9A1P19634 815 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 CYP3A7P24462 503 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 KNOP1Q1ED39 458 aaKnown RBP14.38□□□□□ -0.11
VPS4A-204ENST00000566354 CCDC91Q7Z6B0 441 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 VPS36Q86VN1 386 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 LDHDQ86WU2 507 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.38□□□□□ -0.116e-17■■■■□ 22.6
VPS4A-204ENST00000566354 ZHX3Q9H4I2 956 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 FBXL5Q9UKA1 691 aa14.38□□□□□ -0.11
VPS4A-204ENST00000566354 PARP14Q460N5 1801 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 C19orf81C9J6K1 198 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 BHMG1C9JSJ3 638 aaPredicted RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 PPP1R12AO14974 1030 aaPredicted RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 SART1O43290 800 aaKnown RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 XRCC5P13010 732 aaKnown RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 PON1P27169 355 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 ECHS1P30084 290 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 HSD17B3P37058 310 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP8P40818 1118 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 PRPF38AQ8NAV1 312 aaKnown RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 C12orf42Q96LP6 360 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 CCT8L2Q96SF2 557 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 A0A0A6YYK5 440 aaPredicted RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L15C9J2P7 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L13C9JLJ4 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L11C9JVI0 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L18D6R9N7 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L22D6RA61 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L17D6RBQ6 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L19D6RCP7 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L20D6RJB6 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 PDXKO00764 312 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 CALUO43852 315 aaPredicted RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 MED24O75448 989 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L24Q0WX57 530 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 GIT2Q14161 759 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 USP17L6PQ6QN14 398 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 RUFY4Q6ZNE9 571 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 ARMC9Q7Z3E5 817 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 NLRP14Q86W24 1093 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 TPCN2Q8NHX9 752 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 ZNF473Q8WTR7 871 aaKnown RBP14.37□□□□□ -0.11
VPS4A-204ENST00000566354 WNK4Q96J92 1243 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 MBOAT7Q96N66 472 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 METTL14Q9HCE5 456 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms