RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 A0A087WZ62 844 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 DDX11L8A8MPP1 907 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 REC8O95072 547 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 CYP3A7P24462 503 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 B3GNT9Q6UX72 402 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 BLIDQ8IZY5 108 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 MRPL43Q8N983 215 aaKnown RBP18.97■□□□□ 0.63
CLN3-211ENST00000564091 RDM1Q8NG50 284 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 AIFM3Q96NN9 605 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 FDXACB1Q9BRP7 624 aaPredicted RBP18.97■□□□□ 0.63
CLN3-211ENST00000564091 C22orf23Q9BZE7 217 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 ZSWIM6Q9HCJ5 1215 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 DACT1Q9NYF0 836 aa18.97■□□□□ 0.63
CLN3-211ENST00000564091 SUCLA2Q9P2R7 463 aaPredicted RBP18.97■□□□□ 0.63
CLN3-211ENST00000564091 IGKV6-21A0A0C4DH24 114 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 C2orf71A6NGG8 1288 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 M0R2N6 131 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 CPLX1O14810 134 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 CA8P35219 290 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 BCAR1P56945 870 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 NPY5RQ15761 445 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 KSR1Q8IVT5 923 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 PRSS33Q8NF86 280 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 ETNPPLQ8TBG4 499 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 LPPQ93052 612 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 HCFC2Q9Y5Z7 792 aa18.96■□□□□ 0.63
CLN3-211ENST00000564091 ZDBF2Q9HCK1 2354 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 CLASP2O75122 1294 aaKnown RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 DEXIO95424 95 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 HOXB8P17481 243 aaPredicted RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 PHKA2P46019 1235 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 ALDH7A1P49419 539 aaKnown RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 DNM2P50570 870 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 CDC42EP1Q00587 391 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 SIGLEC14Q08ET2 396 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 STK3Q13188 491 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 SMC1AQ14683 1233 aaKnown RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 TMEM173Q86WV6 379 aaPredicted RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 RHPN2Q8IUC4 686 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 CASP10Q92851 521 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 MBOAT7Q96N66 472 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 MRPL9Q9BYD2 267 aaKnown RBP18.95■□□□□ 0.62
CLN3-211ENST00000564091 CHST12Q9NRB3 414 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 TSHZ2Q9NRE2 1034 aa18.95■□□□□ 0.62
CLN3-211ENST00000564091 EML1O00423 815 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 MAFO75444 373 aaPredicted RBP18.94■□□□□ 0.62
CLN3-211ENST00000564091 CXCL14O95715 111 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 SFPQP23246 707 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLN3-211ENST00000564091 PTPN21Q16825 1174 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 INF2Q27J81 1249 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 PLA2G4FQ68DD2 849 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 TWF2Q6IBS0 349 aaKnown RBP18.94■□□□□ 0.62
CLN3-211ENST00000564091 ANO5Q75V66 913 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 SUGP1Q8IWZ8 645 aaKnown RBP18.94■□□□□ 0.62
CLN3-211ENST00000564091 DAGLBQ8NCG7 672 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 AUTS2Q8WXX7 1259 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 TMEM169Q96HH4 297 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 PHOX2BQ99453 314 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 DDX25Q9UHL0 483 aaKnown RBP18.94■□□□□ 0.62
CLN3-211ENST00000564091 KCNJ14Q9UNX9 436 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 PIN4Q9Y237 131 aaKnown RBP18.94■□□□□ 0.62
CLN3-211ENST00000564091 CYP46A1Q9Y6A2 500 aa18.94■□□□□ 0.62
CLN3-211ENST00000564091 KIAA1671Q9BY89 1806 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 ZNF318Q5VUA4 2279 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 MEIS3P2A8K0S8 358 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 SLC37A4O43826 429 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 ZC3H11AO75152 810 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLN3-211ENST00000564091 WEE2P0C1S8 567 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 PSMC5P62195 406 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 NONOQ15233 471 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLN3-211ENST00000564091 VPS52Q8N1B4 723 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 FBXL6Q8N531 539 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 ASIC4Q96FT7 647 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 ZNF274Q96GC6 653 aaPredicted RBP18.93■□□□□ 0.62
CLN3-211ENST00000564091 NLRP4Q96MN2 994 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 INPP5FQ9Y2H2 1132 aa18.93■□□□□ 0.62
CLN3-211ENST00000564091 DTNBO60941 627 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 NPEPPSP55786 919 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 LETM2Q2VYF4 491 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 TPRNQ4KMQ1 711 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 KANK3Q6NY19 840 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 MOXD1Q6UVY6 613 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 CATSPER4Q7RTX7 472 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 ZBTB33Q86T24 672 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 ZNF410Q86VK4 478 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 C12orf76Q8N812 135 aaPredicted RBP18.92■□□□□ 0.62
CLN3-211ENST00000564091 ZNF579Q8NAF0 562 aaKnown RBP18.92■□□□□ 0.62
CLN3-211ENST00000564091 BCL7CQ8WUZ0 217 aaPredicted RBP18.92■□□□□ 0.62
CLN3-211ENST00000564091 TRAIPQ9BWF2 469 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 INO80BQ9C086 356 aaPredicted RBP18.92■□□□□ 0.62
CLN3-211ENST00000564091 ADAM7Q9H2U9 754 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 POMKQ9H5K3 350 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 NRDE2Q9H7Z3 1164 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 FAM105AQ9NUU6 356 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 TBC1D13Q9NVG8 400 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 PLXNA4Q9HCM2 1894 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 LOXHD1Q8IVV2 1947 aa18.92■□□□□ 0.62
CLN3-211ENST00000564091 EVPLQ92817 2033 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.91■□□□□ 0.62
CLN3-211ENST00000564091 OFD1O75665 1012 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms