RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RASSF10A6NK89 507 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 KRT86O43790 486 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 KRT13P13646 458 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 RFX1P22670 979 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 ANXA13P27216 316 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 PRKCEQ02156 737 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 CNTN2Q02246 1040 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 ENPEPQ07075 957 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 EXOC3L4Q17RC7 722 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 GPAT2Q6NUI2 795 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 PDXDC1Q6P996 788 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 WDR59Q6PJI9 974 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 DLK2Q6UY11 383 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 ANO5Q75V66 913 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 HAUS6Q7Z4H7 955 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 USP37Q86T82 979 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 CEP112Q8N8E3 955 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 VTI1AQ96AJ9 217 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 IFT74Q96LB3 600 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 DESI2Q9BSY9 194 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 ZNF302Q9NR11 478 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 CYP26B1Q9NR63 512 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 RBPJLQ9UBG7 517 aa13.81□□□□□ -0.2
SHMT2-229ENST00000557348 MAFBQ9Y5Q3 323 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-229ENST00000557348 BZW2Q9Y6E2 419 aaKnown RBP13.81□□□□□ -0.2
SHMT2-229ENST00000557348 DNAJC25-GNG10A0A024R161 153 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 IGKV6D-21A0A0A0MT36 114 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 SOWAHBA6NEL2 793 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 RNF225M0QZC1 329 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 P4HA2O15460 535 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 OAS2P29728 719 aaKnown RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 RFC5P40937 340 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 GNG11P61952 73 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 ERVK-9P63128 1117 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 KCNMA1Q12791 1236 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 CETN1Q12798 172 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 MTF1Q14872 753 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 SLC9C1Q4G0N8 1177 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 ZC2HC1CQ53FD0 456 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 FAM102BQ5T8I3 360 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 TCERG1LQ5VWI1 586 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 METTL7BQ6UX53 244 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 ANKRD23Q86SG2 305 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 MORC4Q8TE76 937 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 AFAP1L1Q8TED9 768 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 SLC35C1Q96A29 364 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 LSM14BQ9BX40 385 aaKnown RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 DEF6Q9H4E7 631 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 NHEJ1Q9H9Q4 299 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 NRBP2Q9NSY0 501 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 GEMIN8Q9NWZ8 242 aaKnown RBP13.8□□□□□ -0.2
SHMT2-229ENST00000557348 MRFAP1Q9Y605 127 aa13.8□□□□□ -0.2
SHMT2-229ENST00000557348 KIAA0391O15091 583 aaKnown RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 GAS2O43903 313 aaKnown RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 EXOC3O60645 756 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 OATP04181 439 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 ZBTB48P10074 688 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MCM3P25205 808 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 KLK7P49862 253 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MAPK8IP2Q13387 824 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 DCAF17Q5H9S7 520 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SFMBT2Q5VUG0 894 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SEPT14Q6ZU15 432 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MOB2Q70IA6 237 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 RRAGAQ7L523 313 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 HDXQ7Z353 690 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SRLQ86TD4 932 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MAP4K3Q8IVH8 894 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 CCDC60Q8IWA6 550 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 ABRAQ8N0Z2 381 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 C2orf69Q8N8R5 385 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SMCR8Q8TEV9 937 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 BAP1Q92560 729 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 BORCS6Q96GS4 357 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 GBA2Q9HCG7 927 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 KMT5AQ9NQR1 393 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SEPT9Q9UHD8 586 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 RAB21Q9UL25 225 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 LRRC53A6NM62 1247 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MYO1CO00159 1063 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 CLIC2O15247 247 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 STRNO43815 780 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 ZNF862O60290 1169 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 URI1O94763 535 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 FARP2O94887 1054 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SERPING1P05155 500 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 UBA1P22314 1058 aaKnown RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SLC26A2P50443 739 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 PEX3P56589 373 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 KCNA1Q09470 495 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 CYFIP1Q7L576 1253 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 KIAA1328Q86T90 577 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 GPRC5AQ8NFJ5 357 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 SEPT1Q8WYJ6 367 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 CHP1Q99653 195 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 FUT8Q9BYC5 575 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 NIFKQ9BYG3 293 aaKnown RBP13.79□□□□□ -0.2
SHMT2-229ENST00000557348 AZI2Q9H6S1 392 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 MED4Q9NPJ6 270 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms