RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 POLR3BQ9NW08 1133 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-217ENST00000555953 H7C1D1 291 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 VSIG10L2P0DP72 767 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 KRT4P19013 534 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 SQSTM1Q13501 440 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 TOB2Q14106 344 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-217ENST00000555953 KRTAP15-1Q3LI76 137 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 PIK3R6Q5UE93 754 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 ESRP1Q6NXG1 681 aaKnown RBP6.11□□□□□ -1.43
SCFD1-217ENST00000555953 GPR87Q9BY21 358 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 OSBPL2Q9H1P3 480 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 CABP5Q9NP86 173 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 GPRC5BQ9NZH0 403 aa6.11□□□□□ -1.43
SCFD1-217ENST00000555953 CBX4O00257 560 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 HNRNPLP14866 589 aaKnown RBP eCLIP6.1□□□□□ -1.43
SCFD1-217ENST00000555953 SLC9A1P19634 815 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 RABGGTBP53611 331 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 ZNF174Q15697 407 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 FKBP15Q5T1M5 1219 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 CREB3L3Q68CJ9 461 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 MRGPRGQ86SM5 289 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 GSPT2Q8IYD1 628 aaKnown RBP6.1□□□□□ -1.43
SCFD1-217ENST00000555953 AGAP2Q99490 1192 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
SCFD1-217ENST00000555953 ELF4Q99607 663 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-217ENST00000555953 B4GALT6Q9UBX8 382 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 RCAN3Q9UKA8 241 aa6.1□□□□□ -1.43
SCFD1-217ENST00000555953 CDK11AQ9UQ88 783 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-217ENST00000555953 KLRG2A4D1S0 409 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-217ENST00000555953 RPS6KA4O75676 772 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 SDSP20132 328 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 RANGAP1P46060 587 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-217ENST00000555953 BCAR1P56945 870 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 C1QL3Q5VWW1 255 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 KRT40Q6A162 431 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 KANSL1Q7Z3B3 1105 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 NME9Q86XW9 330 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 ELOA2Q8IYF1 753 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-217ENST00000555953 ULK2Q8IYT8 1036 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 PITHD1Q9GZP4 211 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-217ENST00000555953 KANSL2Q9H9L4 492 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 DMRT1Q9Y5R6 373 aa6.09□□□□□ -1.43
SCFD1-217ENST00000555953 XDHP47989 1333 aa6.08□□□□□ -1.44
SCFD1-217ENST00000555953 PPP1R12AO14974 1030 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 FAM20BO75063 409 aa6.08□□□□□ -1.44
SCFD1-217ENST00000555953 JUNP05412 331 aaKnown RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 BMS1Q14692 1282 aaKnown RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 SF3A1Q15459 793 aaKnown RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 CDCA2Q69YH5 1023 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 ZNF662Q6ZS27 426 aa6.08□□□□□ -1.44
SCFD1-217ENST00000555953 RPGRQ92834 1020 aaKnown RBP6.08□□□□□ -1.44
SCFD1-217ENST00000555953 PGBD4Q96DM1 585 aa6.08□□□□□ -1.44
SCFD1-217ENST00000555953 MTG2Q9H4K7 406 aa6.08□□□□□ -1.44
SCFD1-217ENST00000555953 A0A0A6YYJ9 748 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 JMJD7P0C870 316 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 NANOS3P60323 173 aaKnown RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 SMAD3P84022 425 aaKnown RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 ADCY2Q08462 1091 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 UNQ6494/PRO21346Q6UXR6 183 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 HTR3DQ70Z44 454 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 RPUSD2Q8IZ73 545 aaKnown RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 MB21D1Q8N884 522 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 ATXN2LQ8WWM7 1075 aaKnown RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 ZNF512Q96ME7 567 aaPredicted RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 PRRX2Q99811 253 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 TTPALQ9BTX7 342 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 MYL10Q9BUA6 226 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 NRDE2Q9H7Z3 1164 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 C14orf93Q9H972 538 aaKnown RBP6.07□□□□□ -1.44
SCFD1-217ENST00000555953 NCDNQ9UBB6 729 aa6.07□□□□□ -1.44
SCFD1-217ENST00000555953 A0A0A6YYK5 440 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-217ENST00000555953 DAPK3O43293 454 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 RAMP2O60895 175 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 STC2O76061 302 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 PRPF6O94906 941 aaKnown RBP6.06□□□□□ -1.44
SCFD1-217ENST00000555953 APOL3O95236 402 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 KIR2DL3P43628 341 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 ADCY1Q08828 1119 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 MFSD5Q6N075 450 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 PHYKPLQ8IUZ5 450 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 C7orf31Q8N865 590 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 MDGA1Q8NFP4 955 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 RTF1Q92541 710 aaKnown RBP6.06□□□□□ -1.44
SCFD1-217ENST00000555953 ARL8AQ96BM9 186 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 MNTQ99583 582 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 SOX7Q9BT81 388 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 POFUT1Q9H488 388 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 OXSMQ9NWU1 459 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 PODXL2Q9NZ53 605 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 H2AFY2Q9P0M6 372 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-217ENST00000555953 TRPS1Q9UHF7 1281 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 SPO11Q9Y5K1 396 aa6.06□□□□□ -1.44
SCFD1-217ENST00000555953 GRXCR1A8MXD5 290 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 FOXN1O15353 648 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 OPHN1O60890 802 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 TGM1P22735 817 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 FLT3P36888 993 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 COL10A1Q03692 680 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 SPIDRQ14159 915 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 CFAP100Q494V2 611 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms