RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PARVGQ9HBI0 331 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 SERTAD1Q9UHV2 236 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 CDY2AQ9Y6F7 541 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 PVALEFA0A1B0GWK0 134 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 MYMKA6NI61 221 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 GTPBP6O43824 516 aaPredicted RBP13.47□□□□□ -0.25
DDX55-210ENST00000543016 GADD45BO75293 160 aaPredicted RBP13.47□□□□□ -0.25
DDX55-210ENST00000543016 FAM13AO94988 1023 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 CXCL10P02778 98 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 VTNP04004 478 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 MAPTP10636 758 aaKnown RBP13.47□□□□□ -0.25
DDX55-210ENST00000543016 PLS3P13797 630 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 GLRA2P23416 452 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 CYP2C18P33260 490 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 EFNA5P52803 228 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 PTENP60484 403 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 DRP2Q13474 957 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 SNW1Q13573 536 aaKnown RBP13.47□□□□□ -0.25
DDX55-210ENST00000543016 GIT2Q14161 759 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 TRAF7Q6Q0C0 670 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 POTEHQ6S545 545 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 CCDC65Q8IXS2 484 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 NLRP7Q8WX94 980 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 APBB2Q92870 758 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 ZBTB10Q96DT7 871 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 PAGE5Q96GU1 130 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 SCLT1Q96NL6 688 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 REEP2Q9BRK0 252 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 PPP1R12CQ9BZL4 782 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 TRIM9Q9C026 710 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 LMBRD1Q9NUN5 540 aa13.47□□□□□ -0.25
DDX55-210ENST00000543016 EVPLQ92817 2033 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 FRMD3A2A2Y4 597 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 GPR182O15218 404 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 MBD3O95983 291 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 CTSHP09668 335 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 SRGAP2CP0DJJ0 459 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 DARSP14868 501 aaKnown RBP13.46□□□□□ -0.25
DDX55-210ENST00000543016 SFPQP23246 707 aaKnown RBP eCLIP13.46□□□□□ -0.25
DDX55-210ENST00000543016 FPGSQ05932 587 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 MAPK7Q13164 816 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 KIZQ2M2Z5 673 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 FBXO47Q5MNV8 452 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 TSHZ1Q6ZSZ6 1077 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 MAEAQ7L5Y9 396 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 ZBTB8OSQ8IWT0 167 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 DAW1Q8N136 415 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 RNF149Q8NC42 400 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 DEPTORQ8TB45 409 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 ASAP3Q8TDY4 903 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 CCDC47Q96A33 483 aaKnown RBP13.46□□□□□ -0.25
DDX55-210ENST00000543016 DNAJC19Q96DA6 116 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 NLRP4Q96MN2 994 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 GTPBP4Q9BZE4 634 aaKnown RBP13.46□□□□□ -0.25
DDX55-210ENST00000543016 WNT8AQ9H1J5 351 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 GPRC5CQ9NQ84 441 aa13.46□□□□□ -0.25
DDX55-210ENST00000543016 ARID2Q68CP9 1835 aa13.46□□□□□ -0.26
DDX55-210ENST00000543016 A0A087WZ62 844 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 EFCAB14O75071 495 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 RPS6KA5O75582 802 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 MCM4P33991 863 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 CCL23P55773 120 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 NCBP1Q09161 790 aaKnown RBP13.45□□□□□ -0.26
DDX55-210ENST00000543016 TMEM62Q0P6H9 643 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 ALCAMQ13740 583 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 CAPSQ13938 189 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 CDCA2Q69YH5 1023 aaPredicted RBP13.45□□□□□ -0.26
DDX55-210ENST00000543016 UNC13DQ70J99 1090 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 DYMQ7RTS9 669 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 MYCT1Q8N699 235 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 SEPT8Q92599 483 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 PRIMPOLQ96LW4 560 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 FDXACB1Q9BRP7 624 aaPredicted RBP13.45□□□□□ -0.26
DDX55-210ENST00000543016 FTHL17Q9BXU8 183 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 ST6GALNAC4Q9H4F1 302 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 TMEM134Q9H6X4 195 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 IFT122Q9HBG6 1241 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 IL23AQ9NPF7 189 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 CHST12Q9NRB3 414 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 OLFML3Q9NRN5 406 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 ZMYND8Q9ULU4 1186 aaPredicted RBP13.45□□□□□ -0.26
DDX55-210ENST00000543016 GINS2Q9Y248 185 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 ALPK3Q96L96 1907 aa13.45□□□□□ -0.26
DDX55-210ENST00000543016 UMODL1Q5DID0 1318 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 LRRIQ4A6NIV6 560 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 CCDC169A6NNP5 214 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 TRAK2O60296 914 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 NR1I2O75469 434 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 SMC2O95347 1197 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 ACTN1P12814 892 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 LIG1P18858 919 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 ITGB8P26012 769 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 AFMP43652 599 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 NPTX2P47972 431 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 PEX3P56589 373 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 ASIC1P78348 528 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 LPIN1Q14693 890 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 MBTPS1Q14703 1052 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 FAM187BQ17R55 369 aa13.44□□□□□ -0.26
DDX55-210ENST00000543016 TPRNQ4KMQ1 711 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms