RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 IGSF21Q96ID5 467 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 ZNF577Q9BSK1 485 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 SFXN1Q9H9B4 322 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 CHST12Q9NRB3 414 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 IGSF9Q9P2J2 1179 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 PCDHA10Q9Y5I2 948 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 hCG_1984214I3L0E3 225 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 LMNAP02545 664 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 GPC3P51654 580 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 COL9A3Q14050 684 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 SYNE3Q6ZMZ3 975 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 SGMS1Q86VZ5 419 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 TMEM173Q86WV6 379 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 LRRC71Q8N4P6 559 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 ZNF713Q8N859 430 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 FEZF2Q8TBJ5 459 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 CRYGNQ8WXF5 182 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 RMDN1Q96DB5 314 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 ZNF668Q96K58 619 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 FAM167AQ96KS9 214 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 TRAIPQ9BWF2 469 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 NRBP2Q9NSY0 501 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 BARHL2Q9NY43 387 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 GABBR1Q9UBS5 961 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 WNT16Q9UBV4 365 aa13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 V9GY48 417 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 MYH9P35579 1960 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-209ENST00000539982 CNTNAP5Q8WYK1 1306 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 STK25O00506 426 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 ZC3H11AO75152 810 aaKnown RBP eCLIP13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 GALTP07902 379 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 FGFR4P22455 802 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 PHKA2P46019 1235 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 LETM2Q2VYF4 491 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 C15orf39Q6ZRI6 1047 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 DGLUCYQ7Z3D6 616 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 MICU3Q86XE3 530 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 SCLT1Q96NL6 688 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 EMILIN2Q9BXX0 1053 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 LRRC2Q9BYS8 371 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 NRDE2Q9H7Z3 1164 aa13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 RBM28Q9NW13 759 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-209ENST00000539982 MED19A0JLT2 244 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 SPDYE4A6NLX3 237 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 SKIP12755 728 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 KLRC2P26717 231 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 CLCN4P51793 760 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 CDC42EP1Q00587 391 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 SETQ01105 290 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 FUT2Q10981 343 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 PTPN14Q15678 1187 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 JAKMIP3Q5VZ66 844 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 KIAA2013Q8IYS2 634 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 BCL7CQ8WUZ0 217 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 NLRP7Q8WX94 980 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 KLHL5Q96PQ7 755 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 GCOM2Q9BZD3 368 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 TBC1D13Q9NVG8 400 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 STK39Q9UEW8 545 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 TCEAL9Q9UHQ7 104 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 SAMM50Q9Y512 469 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 DENND4AQ7Z401 1863 aa13.14□□□□□ -0.31
CLSTN3-209ENST00000539982 DMXL1Q9Y485 3027 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 SLC27A2O14975 620 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 NARSO43776 548 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 ZNF862O60290 1169 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 CSDE1O75534 798 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 OFD1O75665 1012 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 OATP04181 439 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 CFHP08603 1231 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 RNASELQ05823 741 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 PUM1Q14671 1186 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 NONOQ15233 471 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 NOMO2Q5JPE7 1267 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 GLB1LQ6UWU2 654 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 LPPQ93052 612 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 VN1R3Q9BXE9 311 aa13.13□□□□□ -0.31
CLSTN3-209ENST00000539982 KRBA1A5PL33 1030 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 WDR64B1ANS9 1081 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 LILRB3O75022 631 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 ZNF623O75123 536 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 CNPP09543 421 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 SLC11A1P49279 550 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 TBC1D8BQ0IIM8 1120 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 RTN1Q16799 776 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 LONRF3Q496Y0 759 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 TWF2Q6IBS0 349 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 APOA5Q6Q788 366 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 CYP26C1Q6V0L0 522 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 SLC44A3Q8N4M1 653 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 CMASQ8NFW8 434 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 EXOC6Q8TAG9 804 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 NXPE3Q969Y0 559 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 LSG1Q9H089 658 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 DISC1Q9NRI5 854 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 DNAJB4Q9UDY4 337 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 R4GN57 208 aa13.12□□□□□ -0.31
CLSTN3-209ENST00000539982 N4BP1O75113 896 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 ALDH2P05091 517 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 RFX1P22670 979 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms