RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CNNM4Q6P4Q7 775 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 SRGAP1Q7Z6B7 1085 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 DAW1Q8N136 415 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 SEPT8Q92599 483 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 NLRP4Q96MN2 994 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 SCLT1Q96NL6 688 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 PRO3102Q9H379 93 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 CDHR5Q9HBB8 845 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 IFT122Q9HBG6 1241 aa22.98■■□□□ 1.27
CD44-222ENST00000526025 A0A087WZ62 844 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 BAIAP3O94812 1187 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 SLFN14P0C7P3 912 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 GHRP10912 638 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 PHKA2P46019 1235 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 NDUFA8P51970 172 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 ZNF131P52739 623 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 PTENP60484 403 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 AMPD3Q01432 767 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 CDCA2Q69YH5 1023 aaPredicted RBP22.97■■□□□ 1.27
CD44-222ENST00000526025 C16orf59Q7L2K0 433 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 MAEAQ7L5Y9 396 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 DEFB128Q7Z7B8 93 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 KSR1Q8IVT5 923 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 RNF149Q8NC42 400 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 TMEM40Q8WWA1 233 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 IFT74Q96LB3 600 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 GBP4Q96PP9 640 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 FDXACB1Q9BRP7 624 aaPredicted RBP22.97■■□□□ 1.27
CD44-222ENST00000526025 IFIH1Q9BYX4 1025 aaKnown RBP22.97■■□□□ 1.27
CD44-222ENST00000526025 GINS2Q9Y248 185 aa22.97■■□□□ 1.27
CD44-222ENST00000526025 GPR182O15218 404 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 ACTN4O43707 911 aaKnown RBP22.96■■□□□ 1.27
CD44-222ENST00000526025 EFCAB14O75071 495 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 RPS6KA5O75582 802 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 ACTN1P12814 892 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 SCP2P22307 547 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 EPHB4P54760 987 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 PAK2Q13177 524 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 GIT2Q14161 759 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 DHX8Q14562 1220 aaKnown RBP22.96■■□□□ 1.27
CD44-222ENST00000526025 TMEM240Q5SV17 173 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 CEP57L1Q8IYX8 460 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 KCNN1Q92952 543 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 REEP2Q9BRK0 252 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 FTHL17Q9BXU8 183 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 C2orf40Q9H1Z8 148 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 GOLPH3LQ9H4A5 285 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 AGO3Q9H9G7 860 aaKnown RBP22.96■■□□□ 1.27
CD44-222ENST00000526025 ERVK-5Q9HDB9 667 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 NOC2LQ9Y3T9 749 aaKnown RBP22.96■■□□□ 1.27
CD44-222ENST00000526025 PHLPP2Q6ZVD8 1323 aa22.96■■□□□ 1.27
CD44-222ENST00000526025 MYMKA6NI61 221 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 KRT18P05783 430 aaKnown RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 SRGAP2CP0DJJ0 459 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 PLS3P13797 630 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 SFPQP23246 707 aaKnown RBP eCLIP22.95■■□□□ 1.26
CD44-222ENST00000526025 DMP1Q13316 513 aaPredicted RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 SPIRE2Q8WWL2 714 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 BSNDQ8WZ55 320 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 HERVK_113Q902F9 699 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 PPP1R16BQ96T49 567 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 NTPCRQ9BSD7 190 aaKnown RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 OSBPL7Q9BZF2 842 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 UBE2OQ9C0C9 1292 aaKnown RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 MTIF3Q9H2K0 278 aaKnown RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 LARSQ9P2J5 1176 aaKnown RBP22.95■■□□□ 1.26
CD44-222ENST00000526025 PADI3Q9ULW8 664 aa22.95■■□□□ 1.26
CD44-222ENST00000526025 ABHD14A-ACY1A0A1B0GW23 586 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 FGBP02675 491 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 MYL1P05976 194 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 UBE2HP62256 183 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 FAM160A1Q05DH4 1040 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 RASIP1Q5U651 963 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 ZNF365Q70YC5 407 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 FAM228AQ86W67 206 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 DBF4BQ8NFT6 615 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 DDX12PQ92771 950 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 DNAJC19Q96DA6 116 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.94■■□□□ 1.26
CD44-222ENST00000526025 PARVGQ9HBI0 331 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 PCDH10Q9P2E7 1040 aa22.94■■□□□ 1.26
CD44-222ENST00000526025 A0A1W2PPC1 479 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 FRMD3A2A2Y4 597 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 TBCAO75347 108 aaKnown RBP22.93■■□□□ 1.26
CD44-222ENST00000526025 ACRP10323 421 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 CD52P31358 61 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 EFNA5P52803 228 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 IKBKEQ14164 716 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 ZBTB8OSQ8IWT0 167 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 FMR1NBQ8N0W7 255 aaPredicted RBP22.93■■□□□ 1.26
CD44-222ENST00000526025 SLC17A8Q8NDX2 589 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 ENGASEQ8NFI3 743 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 CCDC34Q96HJ3 373 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 C7orf25Q9BPX7 421 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 TRIM9Q9C026 710 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 SEL1LQ9UBV2 794 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 SERTAD1Q9UHV2 236 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 ST3GAL5Q9UNP4 418 aa22.93■■□□□ 1.26
CD44-222ENST00000526025 NPHP3-ACAD11A0A0J9YXS1 232 aa22.92■■□□□ 1.26
CD44-222ENST00000526025 LRRIQ4A6NIV6 560 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms