RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PEX26Q7Z412 305 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 NIM1KQ8IY84 436 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SH2D3CQ8N5H7 860 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SLC30A5Q8TAD4 765 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 PLEKHO2Q8TD55 490 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SYTL5Q8TDW5 730 aaPredicted RBP20.77■□□□□ 0.92
VIM-203ENST00000469543 TAF4BQ92750 862 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 ARHGEF26Q96DR7 871 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SLC16A4O15374 487 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 TBC1D12O60347 775 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 PPP1R37O75864 691 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 EPHB4P54760 987 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 LRRC31Q6UY01 552 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 STRA6Q9BX79 667 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 GDF3Q9NR23 364 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 COL2A1P02458 1487 aaPredicted RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 EMSYQ7Z589 1322 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 RBBP6Q7Z6E9 1792 aaKnown RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 ZBTB48P10074 688 aaPredicted RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 SETQ01105 290 aaPredicted RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 MTMR2Q13614 643 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 ZNF746Q6NUN9 644 aaPredicted RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 NSMFQ6X4W1 530 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 ARHGEF19Q8IW93 802 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 LMO3Q8TAP4 145 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 ZIM3Q96PE6 472 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 POP1Q99575 1024 aaKnown RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 STK33Q9BYT3 514 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 THAP2Q9H0W7 228 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 AGO4Q9HCK5 861 aaKnown RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 UBE2TQ9NPD8 197 aaPredicted RBP20.76■□□□□ 0.91
VIM-203ENST00000469543 CALCOCO1Q9P1Z2 691 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 APEX2Q9UBZ4 518 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 ODF2LQ9ULJ1 636 aa20.76■□□□□ 0.91
VIM-203ENST00000469543 GOLGA6CA6NDK9 693 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 BUB1BO60566 1050 aaPredicted RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 GOLGA6DP0CG33 693 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 GUCY2CP25092 1073 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 PEX3P56589 373 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 RIT2Q99578 217 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 GOLGA6AQ9NYA3 693 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 PPP1R1BQ9UD71 204 aaPredicted RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 FBXL5Q9UKA1 691 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 TESPA1A2RU30 521 aaPredicted RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 GTPBP10A4D1E9 387 aaKnown RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 P4HBP07237 508 aaKnown RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 YWHABP31946 246 aaKnown RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 MYL7Q01449 175 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 SP4Q02446 784 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 TRAF1Q13077 416 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 IFT20Q8IY31 132 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 CCDC43Q96MW1 224 aaKnown RBP20.75■□□□□ 0.91
VIM-203ENST00000469543 TEPSINQ96N21 525 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 AMACRQ9UHK6 382 aa20.75■□□□□ 0.91
VIM-203ENST00000469543 BACH1O14867 736 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 CCNE2O96020 404 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 USP8P40818 1118 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 TTMPQ5BVD1 217 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 AADACL2Q6P093 401 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 FAM83AQ86UY5 434 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 CELF4Q9BZC1 486 aaKnown RBP20.74■□□□□ 0.91
VIM-203ENST00000469543 EHMT1Q9H9B1 1298 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 COG5Q9UP83 839 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 USP20Q9Y2K6 914 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 FERP16591 822 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 ERVK-9P63128 1117 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 C1orf220Q5T0J3 134 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 NT5DC3Q86UY8 548 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 VPS36Q86VN1 386 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 GOLGA5Q8TBA6 731 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 TMEM59LQ9UK28 342 aa20.74■□□□□ 0.91
VIM-203ENST00000469543 SART1O43290 800 aaKnown RBP20.73■□□□□ 0.91
VIM-203ENST00000469543 LEKR1Q6ZMV7 388 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 RNF14Q9UBS8 474 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 SEL1LQ9UBV2 794 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 NOC2LQ9Y3T9 749 aaKnown RBP20.73■□□□□ 0.91
VIM-203ENST00000469543 QARSP47897 775 aaKnown RBP20.73■□□□□ 0.91
VIM-203ENST00000469543 ZNF211Q13398 564 aaPredicted RBP20.73■□□□□ 0.91
VIM-203ENST00000469543 C10orf76Q5T2E6 689 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 EMBQ6PCB8 327 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 HAUS6Q7Z4H7 955 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 GOLGA6L1Q8N7Z2 621 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 CCDC127Q96BQ5 260 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 SAAL1Q96ER3 474 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 RMDN3Q96TC7 470 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 NEUROG2Q9H2A3 272 aa20.73■□□□□ 0.91
VIM-203ENST00000469543 LARSQ9P2J5 1176 aaKnown RBP20.73■□□□□ 0.91
VIM-203ENST00000469543 BTNL10A8MVZ5 291 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 PLA2G6O60733 806 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 PRPF4BQ13523 1007 aaKnown RBP20.72■□□□□ 0.91
VIM-203ENST00000469543 PGM5Q15124 567 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 PIK3R5Q8WYR1 880 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 ZKSCAN4Q969J2 545 aaPredicted RBP20.72■□□□□ 0.91
VIM-203ENST00000469543 SYT11Q9BT88 431 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 MKNK1Q9BUB5 465 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 SLC38A10Q9HBR0 1119 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 ZNF233A6NK53 670 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 CALCAP01258 141 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 VCAM1P19320 739 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 FLT3P36888 993 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms