RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 H0YIN7 160 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 H3BQF6 201 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 SLC16A4O15374 487 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 HSPA4LO95757 839 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 GYPCP04921 128 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 ELF1P32519 619 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 COASYQ13057 564 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 PRPSAP1Q14558 356 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 EPC2Q52LR7 807 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 EHD4Q9H223 541 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 TUBGCP6Q96RT7 1819 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 LOC100653049A0A140TA62 436 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CTIFO43310 598 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 ATMINO43313 823 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 KRT34O76011 436 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ARFIP2P53365 341 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CDC37Q16543 378 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 UNC13DQ70J99 1090 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CRLF3Q8IUI8 442 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ZNF507Q8TCN5 953 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ALKBH8Q96BT7 664 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 HEXIM2Q96MH2 286 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 NPHS2Q9NP85 383 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ADA2Q9NZK5 511 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 FHOD1Q9Y613 1164 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ANO9A1A5B4 782 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 SPDYE2BA6NHP3 402 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 LRRIQ3A6PVS8 624 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 USP17L10C9JJH3 530 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CIAO1O76071 339 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 UBTFL6P0CB48 400 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 SPDYE6P0CI01 402 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 P4HA1P13674 534 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 TCN1P20061 433 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 PSMA2P25787 234 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 STX1BP61266 288 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 PRAMEP78395 509 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 LMNB2Q03252 620 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 POU5F1BQ06416 359 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ISLR2Q6UXK2 745 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 TRIM67Q6ZTA4 783 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ERP27Q96DN0 273 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ACCSQ96QU6 501 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 NACC1Q96RE7 527 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.28□□□□□ -0.92
RTN3-202ENST00000339997 NUP85Q9BW27 656 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 TRPV6Q9H1D0 765 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 RGL1Q9NZL6 768 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 MROH7-TTC4A0A0A0MT08 1334 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CLTCL1P53675 1640 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 SYNDIG1LA6NDD5 238 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 LAD1O00515 517 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ENO1P06733 434 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 C2CD6Q53TS8 623 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 GABPB2Q8TAK5 448 aaPredicted RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 PSPC1Q8WXF1 523 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 SLC38A10Q9HBR0 1119 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 DMGDHQ9UI17 866 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 EIF2AK4Q9P2K8 1649 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 RAD51CO43502 376 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 TRIM37O94972 964 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 FDPSP14324 419 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 PMS1P54277 932 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 ALDH18A1P54886 795 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 DEUP1Q05D60 604 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 PSMD2Q13200 908 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 KYNUQ16719 465 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 WDR75Q8IWA0 830 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 FAM213AQ9BRX8 229 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 GPR108Q9NPR9 543 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 CEP72Q9P209 647 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 ANGPTL2Q9UKU9 493 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 AKT3Q9Y243 479 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 SHANK2Q9UPX8 1470 aa9.28□□□□□ -0.92
RTN3-202ENST00000339997 GOLGA4Q13439 2230 aaKnown RBP9.28□□□□□ -0.92
RTN3-202ENST00000339997 SETD1BQ9UPS6 1966 aaKnown RBP9.27□□□□□ -0.92
RTN3-202ENST00000339997 PRPSAP2O60256 369 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 MYCP01106 439 aaPredicted RBP9.27□□□□□ -0.92
RTN3-202ENST00000339997 KRT3P12035 628 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 GARSP41250 739 aaKnown RBP9.27□□□□□ -0.92
RTN3-202ENST00000339997 BPIFB4P59827 614 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 NBPF9Q3BBW0 867 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 GPATCH4Q5T3I0 446 aaKnown RBP9.27□□□□□ -0.92
RTN3-202ENST00000339997 ZBTB10Q96DT7 871 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 ADPGKQ9BRR6 497 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 FUT8Q9BYC5 575 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 ADD3Q9UEY8 706 aaKnown RBP9.27□□□□□ -0.92
RTN3-202ENST00000339997 LCMT1Q9UIC8 334 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 NEURL4Q96JN8 1562 aa9.27□□□□□ -0.92
RTN3-202ENST00000339997 DCTN3O75935 186 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 NMT1P30419 496 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 NUMBP49757 651 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ERICH1Q86X53 443 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ZNF564Q8TBZ8 553 aaPredicted RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 RNF217Q8TC41 542 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 SEC16BQ96JE7 1060 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 EPN3Q9H201 632 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 MAGEF1Q9HAY2 307 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 MRPL47Q9HD33 250 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 FBXO2Q9UK22 296 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms