RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 TTLL4Q14679 1199 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 RASAL3Q86YV0 1011 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 FAM167AQ96KS9 214 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 IFT74Q96LB3 600 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 POLR3FQ9H1D9 316 aaPredicted RBP16.3■□□□□ 0.2
CCDC47-201ENST00000225726 CEP72Q9P209 647 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 DIS3Q9Y2L1 958 aaKnown RBP16.3■□□□□ 0.2
CCDC47-201ENST00000225726 ABCD1P33897 745 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 RFC5P40937 340 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 DCAF17Q5H9S7 520 aaPredicted RBP16.29■□□□□ 0.2
CCDC47-201ENST00000225726 MAP4K3Q8IVH8 894 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 DHX37Q8IY37 1157 aaKnown RBP16.29■□□□□ 0.2
CCDC47-201ENST00000225726 SCFD2Q8WU76 684 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 SLC35C1Q96A29 364 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 CHP1Q99653 195 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 DHX33Q9H6R0 707 aaKnown RBP16.29■□□□□ 0.2
CCDC47-201ENST00000225726 AZI2Q9H6S1 392 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 TBX20Q9UMR3 447 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 PAXBP1Q9Y5B6 917 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 H0YCG3 227 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 SOX10P56693 466 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 CEP89Q96ST8 783 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 VTA1Q9NP79 307 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 ZNF236Q9UL36 1845 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 NOP56O00567 594 aaKnown RBP16.29■□□□□ 0.2
CCDC47-201ENST00000225726 TXNP10599 105 aaKnown RBP16.29■□□□□ 0.2
CCDC47-201ENST00000225726 TCERG1LQ5VWI1 586 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 GPR142Q7Z601 462 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 BAP1Q92560 729 aa16.29■□□□□ 0.2
CCDC47-201ENST00000225726 EXOC3O60645 756 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 MAPK4P31152 587 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PPP2R5AQ15172 486 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 TARBP2Q15633 366 aaKnown RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PLAGL2Q9UPG8 496 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 DENND3A2RUS2 1198 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 DCAF8L1A6NGE4 600 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 NOL4O94818 638 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 GRB14Q14449 540 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PDXDC1Q6P996 788 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 CACNA2D4Q7Z3S7 1137 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 EMSYQ7Z589 1322 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 SPATA33Q96N06 139 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 NUCKS1Q9H1E3 243 aaKnown RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 ZCCHC17Q9NP64 241 aaKnown RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 GTPBP10A4D1E9 387 aaKnown RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 MANSC4A6NHS7 340 aaPredicted RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 SCP2P22307 547 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 ZNF157P51786 506 aaPredicted RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PLPPR4Q7Z2D5 763 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PLEKHH3Q7Z736 793 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 CRACR2AQ9BSW2 395 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 PLCB1Q9NQ66 1216 aa16.28■□□□□ 0.2
CCDC47-201ENST00000225726 EPN1Q9Y6I3 576 aaPredicted RBP16.28■□□□□ 0.2
CCDC47-201ENST00000225726 MAPK13O15264 365 aa16.27■□□□□ 0.2
CCDC47-201ENST00000225726 CCDC170Q8IYT3 715 aa16.27■□□□□ 0.2
CCDC47-201ENST00000225726 SLC7A3Q8WY07 619 aa16.27■□□□□ 0.2
CCDC47-201ENST00000225726 KIFC3Q9BVG8 833 aa16.27■□□□□ 0.2
CCDC47-201ENST00000225726 PDGFCQ9NRA1 345 aa16.27■□□□□ 0.2
CCDC47-201ENST00000225726 RBM47A0AV96 593 aaKnown RBP16.27■□□□□ 0.19
CCDC47-201ENST00000225726 NDUFA10O95299 355 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 HSDL1Q3SXM5 330 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 GBP6Q6ZN66 633 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 RRAGAQ7L523 313 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 KIF18AQ8NI77 898 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 ZNF592Q92610 1267 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 KCNN1Q92952 543 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 GANQ9H2C0 597 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 HSPBP1Q9NZL4 362 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 ADGRA2Q96PE1 1338 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 LRRC53A6NM62 1247 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 CYLC1P35663 651 aaPredicted RBP16.27■□□□□ 0.19
CCDC47-201ENST00000225726 ETF1P62495 437 aaKnown RBP16.27■□□□□ 0.19
CCDC47-201ENST00000225726 EXOC3L4Q17RC7 722 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 TAPT1Q6NXT6 567 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 MAMDC4Q6UXC1 1216 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 XXYLT1Q8NBI6 393 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 ACRBPQ8NEB7 543 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 ARHGAP28Q9P2N2 729 aa16.27■□□□□ 0.19
CCDC47-201ENST00000225726 SIP14410 1827 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 ARL2P36404 184 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 TRIM65Q6PJ69 517 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 SYN2Q92777 582 aaPredicted RBP16.26■□□□□ 0.19
CCDC47-201ENST00000225726 GLG1Q92896 1179 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 COPS5Q92905 334 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 CBWD1Q9BRT8 395 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 PCIF1Q9H4Z3 704 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 ADGRA3Q8IWK6 1321 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 TISP43B9A030 160 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 KRT13P13646 458 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 BFSP1Q12934 665 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 INTS8Q75QN2 995 aaKnown RBP16.26■□□□□ 0.19
CCDC47-201ENST00000225726 DPP9Q86TI2 863 aa16.26■□□□□ 0.19
CCDC47-201ENST00000225726 NHEJ1Q9H9Q4 299 aaPredicted RBP16.26■□□□□ 0.19
CCDC47-201ENST00000225726 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.26■□□□□ 0.19
CCDC47-201ENST00000225726 SLC15A5A6NIM6 579 aa16.25■□□□□ 0.19
CCDC47-201ENST00000225726 SLC26A2P50443 739 aa16.25■□□□□ 0.19
CCDC47-201ENST00000225726 POLR2FP61218 127 aaKnown RBP16.25■□□□□ 0.19
CCDC47-201ENST00000225726 DPY19L2P1Q6NXN4 242 aa16.25■□□□□ 0.19
CCDC47-201ENST00000225726 TMEM143Q96AN5 459 aa16.25■□□□□ 0.19
CCDC47-201ENST00000225726 PHLPP2Q6ZVD8 1323 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms