RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	PPP6R1	Q9UPN7	881 aa		40.92	■■■■■ 4.14
VEGFA-231	ENST00000640499	EIF2AK4	Q9P2K8	1649 aa	Known RBP	40.92	■■■■■ 4.14
VEGFA-231	ENST00000640499	ESF1	Q9H501	851 aa	Known RBP	40.91	■■■■■ 4.14
VEGFA-231	ENST00000640499	RNF17	Q9BXT8	1623 aa	Known RBP	40.89	■■■■■ 4.14
VEGFA-231	ENST00000640499	MROH2A	A6NES4	1674 aa		40.88	■■■■■ 4.13
VEGFA-231	ENST00000640499	ZMYM3	Q14202	1370 aa		40.87	■■■■■ 4.13
VEGFA-231	ENST00000640499	MROH1	Q8NDA8	1641 aa		40.86	■■■■■ 4.13
VEGFA-231	ENST00000640499	ERBIN	Q96RT1	1412 aa		40.86	■■■■■ 4.13
VEGFA-231	ENST00000640499	ITGAE	P38570	1179 aa		40.83	■■■■■ 4.13
VEGFA-231	ENST00000640499	ROCK1	Q13464	1354 aa		40.79	■■■■■ 4.12
VEGFA-231	ENST00000640499	KDM5D	Q9BY66	1539 aa		40.77	■■■■■ 4.12
VEGFA-231	ENST00000640499	LMTK3	Q96Q04	1460 aa		40.76	■■■■■ 4.12
VEGFA-231	ENST00000640499	WASHC2C	Q9Y4E1	1318 aa		40.75	■■■■■ 4.11
VEGFA-231	ENST00000640499	FAM135A	Q9P2D6	1515 aa		40.75	■■■■■ 4.11
VEGFA-231	ENST00000640499	DEPDC5	O75140	1603 aa		40.72	■■■■■ 4.11
VEGFA-231	ENST00000640499	ANKRD50	Q9ULJ7	1429 aa		40.71	■■■■■ 4.11
VEGFA-231	ENST00000640499	ABCC3	O15438	1527 aa		40.71	■■■■■ 4.11
VEGFA-231	ENST00000640499	PRDM15	P57071	1507 aa	Predicted RBP	40.69	■■■■■ 4.1
VEGFA-231	ENST00000640499	SETD1B	Q9UPS6	1966 aa	Known RBP	40.69	■■■■■ 4.1
VEGFA-231	ENST00000640499	NPAT	Q14207	1427 aa		40.66	■■■■■ 4.1
VEGFA-231	ENST00000640499	PREX1	Q8TCU6	1659 aa		40.64	■■■■■ 4.1
VEGFA-231	ENST00000640499	CEP152	O94986	1710 aa		40.63	■■■■■ 4.09
VEGFA-231	ENST00000640499	ZC3H13	Q5T200	1668 aa	Known RBP	40.62	■■■■■ 4.09
VEGFA-231	ENST00000640499	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	40.62	■■■■■ 4.09	1e-14	■■■□□ 16.5
VEGFA-231	ENST00000640499	FBXO31	Q5XUX0	539 aa	Predicted RBP	40.61	■■■■■ 4.09
VEGFA-231	ENST00000640499	VWDE	Q8N2E2	1590 aa		40.61	■■■■■ 4.09
VEGFA-231	ENST00000640499	PZP	P20742	1482 aa		40.6	■■■■■ 4.09
VEGFA-231	ENST00000640499	HSPA2	P54652	639 aa		40.57	■■■■■ 4.09
VEGFA-231	ENST00000640499	CAMSAP1	Q5T5Y3	1602 aa		40.54	■■■■■ 4.08
VEGFA-231	ENST00000640499	UHRF1BP1	Q6BDS2	1440 aa		40.53	■■■■■ 4.08
VEGFA-231	ENST00000640499	LMTK2	Q8IWU2	1503 aa		40.49	■■■■■ 4.07
VEGFA-231	ENST00000640499	NAIP	Q13075	1403 aa		40.49	■■■■■ 4.07
VEGFA-231	ENST00000640499	KANK1	Q14678	1352 aa		40.48	■■■■■ 4.07
VEGFA-231	ENST00000640499	UNC13B	O14795	1591 aa		40.48	■■■■■ 4.07
VEGFA-231	ENST00000640499	MYO3A	Q8NEV4	1616 aa		40.45	■■■■■ 4.07
VEGFA-231	ENST00000640499	ARHGAP31	Q2M1Z3	1444 aa		40.45	■■■■■ 4.07
VEGFA-231	ENST00000640499	TNR	Q92752	1358 aa		40.43	■■■■■ 4.06
VEGFA-231	ENST00000640499	SPATA31D1	Q6ZQQ2	1576 aa		40.41	■■■■■ 4.06
VEGFA-231	ENST00000640499	CFAP65	Q6ZU64	1925 aa	Known RBP	40.41	■■■■■ 4.06
VEGFA-231	ENST00000640499	ERVK-7	P63135	1459 aa		40.4	■■■■■ 4.06
VEGFA-231	ENST00000640499	HFM1	A2PYH4	1435 aa		40.4	■■■■■ 4.06
VEGFA-231	ENST00000640499	GCC2	Q8IWJ2	1684 aa		40.4	■■■■■ 4.06
VEGFA-231	ENST00000640499	ZNF142	P52746	1687 aa	Predicted RBP	40.37	■■■■■ 4.05
VEGFA-231	ENST00000640499	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	40.35	■■■■■ 4.05
VEGFA-231	ENST00000640499	EFCAB6	Q5THR3	1501 aa		40.34	■■■■■ 4.05
VEGFA-231	ENST00000640499	A2ML1	A8K2U0	1454 aa		40.31	■■■■■ 4.04
VEGFA-231	ENST00000640499	IQGAP3	Q86VI3	1631 aa		40.31	■■■■■ 4.04
VEGFA-231	ENST00000640499	NUP155	O75694	1391 aa		40.3	■■■■■ 4.04
VEGFA-231	ENST00000640499	TET3	O43151	1660 aa		40.29	■■■■■ 4.04
VEGFA-231	ENST00000640499	STRC	Q7RTU9	1775 aa		40.28	■■■■■ 4.04
VEGFA-231	ENST00000640499	NLRP1	Q9C000	1473 aa		40.26	■■■■■ 4.03
VEGFA-231	ENST00000640499	NOS1	P29475	1434 aa		40.22	■■■■■ 4.03
VEGFA-231	ENST00000640499		E9PCH4	1651 aa		40.19	■■■■■ 4.02
VEGFA-231	ENST00000640499	RPRD2	Q5VT52	1461 aa	Known RBP	40.19	■■■■■ 4.02
VEGFA-231	ENST00000640499	SYNM	O15061	1565 aa		40.18	■■■■■ 4.02
VEGFA-231	ENST00000640499	UGGT1	Q9NYU2	1555 aa		40.13	■■■■■ 4.01
VEGFA-231	ENST00000640499	PLA2R1	Q13018	1463 aa		40.12	■■■■■ 4.01
VEGFA-231	ENST00000640499	IDI1	Q13907	227 aa		40.1	■■■■■ 4.01
VEGFA-231	ENST00000640499	NCKAP5L	Q9HCH0	1330 aa		40.1	■■■■■ 4.01
VEGFA-231	ENST00000640499	UBR1	Q8IWV7	1749 aa		40.08	■■■■■ 4.01
VEGFA-231	ENST00000640499	PIK3C2B	O00750	1634 aa		40.06	■■■■■ 4
VEGFA-231	ENST00000640499	THEMIS	Q8N1K5	641 aa	Predicted RBP	40.06	■■■■■ 4
VEGFA-231	ENST00000640499	TRIM52	Q96A61	297 aa		40.05	■■■■■ 4
VEGFA-231	ENST00000640499	SETD5	Q9C0A6	1442 aa		40.04	■■■■■ 4
VEGFA-231	ENST00000640499	SLC52A1	Q9NWF4	448 aa		39.99	■■■■□ 3.99
VEGFA-231	ENST00000640499	PTPRT	O14522	1441 aa		39.99	■■■■□ 3.99
VEGFA-231	ENST00000640499	PKD2	Q13563	968 aa		39.98	■■■■□ 3.99
VEGFA-231	ENST00000640499	DMRT2	Q9Y5R5	561 aa		39.97	■■■■□ 3.99
VEGFA-231	ENST00000640499	NEURL4	Q96JN8	1562 aa		39.93	■■■■□ 3.98
VEGFA-231	ENST00000640499	RAB3GAP2	Q9H2M9	1393 aa		39.93	■■■■□ 3.98
VEGFA-231	ENST00000640499	KDM5A	P29375	1690 aa	Known RBP	39.92	■■■■□ 3.98
VEGFA-231	ENST00000640499	ARHGAP23	Q9P227	1491 aa		39.91	■■■■□ 3.98
VEGFA-231	ENST00000640499	ANKLE2	Q86XL3	938 aa		39.9	■■■■□ 3.98
VEGFA-231	ENST00000640499	SLC4A1AP	Q9BWU0	796 aa	Known RBP	39.9	■■■■□ 3.98
VEGFA-231	ENST00000640499	POLR1A	O95602	1720 aa	Predicted RBP	39.9	■■■■□ 3.98
VEGFA-231	ENST00000640499	SLIT1	O75093	1534 aa		39.89	■■■■□ 3.98
VEGFA-231	ENST00000640499	SPHKAP	Q2M3C7	1700 aa		39.88	■■■■□ 3.98
VEGFA-231	ENST00000640499	ADGRB3	O60242	1522 aa		39.88	■■■■□ 3.97
VEGFA-231	ENST00000640499	TMEM131L	A2VDJ0	1609 aa		39.85	■■■■□ 3.97
VEGFA-231	ENST00000640499	LTK	P29376	864 aa		39.85	■■■■□ 3.97
VEGFA-231	ENST00000640499	TMEM2	Q9UHN6	1383 aa		39.84	■■■■□ 3.97
VEGFA-231	ENST00000640499	MPHOSPH9	Q99550	1183 aa		39.84	■■■■□ 3.97
VEGFA-231	ENST00000640499	STAG3	Q9UJ98	1225 aa		39.84	■■■■□ 3.97
VEGFA-231	ENST00000640499	MYO5B	Q9ULV0	1848 aa		39.83	■■■■□ 3.97
VEGFA-231	ENST00000640499	MED14	O60244	1454 aa		39.82	■■■■□ 3.97
VEGFA-231	ENST00000640499	FOXD1	Q16676	465 aa		39.8	■■■■□ 3.96
VEGFA-231	ENST00000640499	TRPM2	O94759	1503 aa		39.78	■■■■□ 3.96
VEGFA-231	ENST00000640499	TXNDC2	Q86VQ3	553 aa		39.77	■■■■□ 3.96
VEGFA-231	ENST00000640499	SCAF11	Q99590	1463 aa	Known RBP	39.76	■■■■□ 3.96
VEGFA-231	ENST00000640499	NPHP4	O75161	1426 aa	Predicted RBP	39.76	■■■■□ 3.96
VEGFA-231	ENST00000640499	ACIN1	Q9UKV3	1341 aa	Known RBP	39.74	■■■■□ 3.95
VEGFA-231	ENST00000640499	CLTCL1	P53675	1640 aa		39.74	■■■■□ 3.95
VEGFA-231	ENST00000640499	HRC	P23327	699 aa		39.73	■■■■□ 3.95
VEGFA-231	ENST00000640499	CHGA	P10645	457 aa	Known RBP	39.71	■■■■□ 3.95
VEGFA-231	ENST00000640499	ZFYVE9	O95405	1425 aa		39.71	■■■■□ 3.95
VEGFA-231	ENST00000640499	IQGAP1	P46940	1657 aa		39.7	■■■■□ 3.95
VEGFA-231	ENST00000640499	LTBP4	Q8N2S1	1624 aa		39.67	■■■■□ 3.94
VEGFA-231	ENST00000640499	EID1	Q9Y6B2	187 aa		39.67	■■■■□ 3.94
VEGFA-231	ENST00000640499	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	39.66	■■■■□ 3.94
VEGFA-231	ENST00000640499	RIMS2	Q9UQ26	1411 aa		39.65	■■■■□ 3.94

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms