RNA–Protein interactions for RNA: ENST00000629570.1

LINC00550-202, long intergenic non-protein coding RNA 550, humanhuman

TSL 3

Gene LINC00550, Length 317 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-202ENST00000629570 RAPGEF3O95398 923 aa8.72□□□□□ -1.01
LINC00550-202ENST00000629570 CCNB3Q8WWL7 1395 aa8.72□□□□□ -1.01
LINC00550-202ENST00000629570 SUPT6HQ7KZ85 1726 aaKnown RBP8.71□□□□□ -1.01
LINC00550-202ENST00000629570 EFCAB2Q5VUJ9 269 aa8.71□□□□□ -1.02
LINC00550-202ENST00000629570 SLC39A7Q92504 469 aa8.71□□□□□ -1.02
LINC00550-202ENST00000629570 SCAPERQ9BY12 1400 aa8.71□□□□□ -1.02
LINC00550-202ENST00000629570 DENND4BO75064 1496 aaPredicted RBP8.7□□□□□ -1.02
LINC00550-202ENST00000629570 ABCC1P33527 1531 aa8.7□□□□□ -1.02
LINC00550-202ENST00000629570 C7P10643 843 aa8.7□□□□□ -1.02
LINC00550-202ENST00000629570 ATN1P54259 1190 aaPredicted RBP8.7□□□□□ -1.02
LINC00550-202ENST00000629570 PLCD3Q8N3E9 789 aa8.7□□□□□ -1.02
LINC00550-202ENST00000629570 POGZQ7Z3K3 1410 aa8.7□□□□□ -1.02
LINC00550-202ENST00000629570 ARHGEF12Q9NZN5 1544 aa8.7□□□□□ -1.02
LINC00550-202ENST00000629570 SAMD9LQ8IVG5 1584 aa8.69□□□□□ -1.02
LINC00550-202ENST00000629570 RICTORQ6R327 1708 aa8.69□□□□□ -1.02
LINC00550-202ENST00000629570 MAP3K13O43283 966 aa8.69□□□□□ -1.02
LINC00550-202ENST00000629570 CFDP1Q9UEE9 299 aaPredicted RBP8.69□□□□□ -1.02
LINC00550-202ENST00000629570 TRPC6Q9Y210 931 aa8.69□□□□□ -1.02
LINC00550-202ENST00000629570 ITSN2Q9NZM3 1697 aa8.69□□□□□ -1.02
LINC00550-202ENST00000629570 FKBP8Q14318 412 aa8.68□□□□□ -1.02
LINC00550-202ENST00000629570 ZNF777Q9ULD5 760 aaPredicted RBP8.68□□□□□ -1.02
LINC00550-202ENST00000629570 SYCP2Q9BX26 1530 aa8.68□□□□□ -1.02
LINC00550-202ENST00000629570 ZMYM4Q5VZL5 1548 aa8.67□□□□□ -1.02
LINC00550-202ENST00000629570 ZNF644Q9H582 1327 aaPredicted RBP8.67□□□□□ -1.02
LINC00550-202ENST00000629570 BMP2KQ9NSY1 1161 aaPredicted RBP8.67□□□□□ -1.02
LINC00550-202ENST00000629570 TRAPPC8Q9Y2L5 1435 aa8.67□□□□□ -1.02
LINC00550-202ENST00000629570 KDM5CP41229 1560 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 ARHGEF40Q8TER5 1519 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 ZNF518AQ6AHZ1 1483 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 MYOM3Q5VTT5 1437 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 YEATS2Q9ULM3 1422 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 POTEJP0CG39 1038 aa8.66□□□□□ -1.02
LINC00550-202ENST00000629570 CAMSAP2Q08AD1 1489 aa8.65□□□□□ -1.02
LINC00550-202ENST00000629570 AFAP1Q8N556 730 aa8.65□□□□□ -1.02
LINC00550-202ENST00000629570 ZFYVE16Q7Z3T8 1539 aa8.64□□□□□ -1.03
LINC00550-202ENST00000629570 PLEKHH2Q8IVE3 1493 aa8.64□□□□□ -1.03
LINC00550-202ENST00000629570 KIAA1107Q9UPP5 1409 aa8.64□□□□□ -1.03
LINC00550-202ENST00000629570 HNRNPMP52272 730 aaKnown RBP eCLIP8.64□□□□□ -1.03
LINC00550-202ENST00000629570 PPARGC1BQ86YN6 1023 aaKnown RBP8.64□□□□□ -1.03
LINC00550-202ENST00000629570 MBD5Q9P267 1494 aa8.64□□□□□ -1.03
LINC00550-202ENST00000629570 TIE1P35590 1138 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 NUBP1P53384 320 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 ZBTB47Q9UFB7 747 aaPredicted RBP8.63□□□□□ -1.03
LINC00550-202ENST00000629570 HECW2Q9P2P5 1572 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 MAGI2Q86UL8 1455 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 FGD6Q6ZV73 1430 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 MIA2Q96PC5 1412 aa8.63□□□□□ -1.03
LINC00550-202ENST00000629570 SIGLEC1Q9BZZ2 1709 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 POTEFA5A3E0 1075 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 CCDC141Q6ZP82 1450 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 MLH3Q9UHC1 1453 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 ABCA6Q8N139 1617 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 PTPN23Q9H3S7 1636 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 INO80Q9ULG1 1556 aaPredicted RBP8.61□□□□□ -1.03
LINC00550-202ENST00000629570 DIP2CQ9Y2E4 1556 aa8.61□□□□□ -1.03
LINC00550-202ENST00000629570 KIDINS220Q9ULH0 1771 aa8.6□□□□□ -1.03
LINC00550-202ENST00000629570 ARHGEF5Q12774 1597 aa8.6□□□□□ -1.03
LINC00550-202ENST00000629570 ATP7AQ04656 1500 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 SPAG9O60271 1321 aaKnown RBP8.59□□□□□ -1.03
LINC00550-202ENST00000629570 TCOF1Q13428 1488 aaKnown RBP8.59□□□□□ -1.03
LINC00550-202ENST00000629570 TTLL13PA6NNM8 815 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 MAMSTRQ6ZN01 415 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 MYT1LQ9UL68 1186 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 PCDHB13Q9Y5F0 798 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 C9orf84Q5VXU9 1444 aa8.59□□□□□ -1.03
LINC00550-202ENST00000629570 ATP10AO60312 1499 aa8.58□□□□□ -1.04
LINC00550-202ENST00000629570 KDM4FA0A1W2PPD8 638 aa8.58□□□□□ -1.04
LINC00550-202ENST00000629570 FAM212AQ96EL1 285 aa8.57□□□□□ -1.04
LINC00550-202ENST00000629570 SGIP1Q9BQI5 828 aa8.57□□□□□ -1.04
LINC00550-202ENST00000629570 REREQ9P2R6 1566 aa8.56□□□□□ -1.04
LINC00550-202ENST00000629570 ARID4BQ4LE39 1312 aaPredicted RBP8.56□□□□□ -1.04
LINC00550-202ENST00000629570 ABCC5O15440 1437 aa8.56□□□□□ -1.04
LINC00550-202ENST00000629570 POTEMA6NI47 508 aa8.56□□□□□ -1.04
LINC00550-202ENST00000629570 SCUBE2Q9NQ36 999 aa8.56□□□□□ -1.04
LINC00550-202ENST00000629570 PLSCR2Q9NRY7 297 aa8.56□□□□□ -1.04
LINC00550-202ENST00000629570 RTEL1-TNFRSF6BF6WH68 1400 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 DAPK1P53355 1430 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 DNMT1P26358 1616 aaKnown RBP8.55□□□□□ -1.04
LINC00550-202ENST00000629570 FAM50AQ14320 339 aaKnown RBP8.55□□□□□ -1.04
LINC00550-202ENST00000629570 RSPH4AQ5TD94 716 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 IFNL1Q8IU54 200 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 SHANK2Q9UPX8 1470 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 PLXNC1O60486 1568 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 MAST1Q9Y2H9 1570 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 CROCC2H7BZ55 1655 aa8.55□□□□□ -1.04
LINC00550-202ENST00000629570 BCORL1Q5H9F3 1711 aa8.54□□□□□ -1.04
LINC00550-202ENST00000629570 A2MP01023 1474 aa8.54□□□□□ -1.04
LINC00550-202ENST00000629570 TRIM35Q9UPQ4 493 aa8.54□□□□□ -1.04
LINC00550-202ENST00000629570 COLQQ9Y215 455 aaPredicted RBP8.54□□□□□ -1.04
LINC00550-202ENST00000629570 AGLP35573 1532 aa8.54□□□□□ -1.04
LINC00550-202ENST00000629570 ADAMTSL3P82987 1691 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 ADGBQ8N7X0 1667 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 TSPY4P0CV99 314 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 TSPY10P0CW01 314 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 MLECQ14165 292 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 POTEGQ6S5H5 508 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 MADDQ8WXG6 1647 aa8.53□□□□□ -1.04
LINC00550-202ENST00000629570 SEC24BO95487 1268 aa8.52□□□□□ -1.05
LINC00550-202ENST00000629570 PTPRKQ15262 1439 aa8.52□□□□□ -1.05
LINC00550-202ENST00000629570 RRBP1Q9P2E9 1410 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms