RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ALKQ9UM73 1620 aa13.99□□□□□ -0.17
SHKBP1-220ENST00000599716 KIAA1107Q9UPP5 1409 aa13.98□□□□□ -0.17
SHKBP1-220ENST00000599716 MSH5O43196 834 aa13.98□□□□□ -0.17
SHKBP1-220ENST00000599716 PLEKHH2Q8IVE3 1493 aa13.98□□□□□ -0.17
SHKBP1-220ENST00000599716 CEP170BQ9Y4F5 1589 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-220ENST00000599716 ZNF142P52746 1687 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-220ENST00000599716 ADGBQ8N7X0 1667 aa13.96□□□□□ -0.17
SHKBP1-220ENST00000599716 MBD5Q9P267 1494 aa13.96□□□□□ -0.17
SHKBP1-220ENST00000599716 SHANK2Q9UPX8 1470 aa13.96□□□□□ -0.17
SHKBP1-220ENST00000599716 EHBP1L1Q8N3D4 1523 aa13.95□□□□□ -0.18
SHKBP1-220ENST00000599716 FBXO31Q5XUX0 539 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-220ENST00000599716 CEP162Q5TB80 1403 aa13.93□□□□□ -0.18
SHKBP1-220ENST00000599716 KIF3BO15066 747 aa13.91□□□□□ -0.18
SHKBP1-220ENST00000599716 CAMSAP2Q08AD1 1489 aa13.91□□□□□ -0.18
SHKBP1-220ENST00000599716 DNMT1P26358 1616 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-220ENST00000599716 UPF1Q92900 1129 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHKBP1-220ENST00000599716 NCOA2Q15596 1464 aa13.9□□□□□ -0.18
SHKBP1-220ENST00000599716 SETD1AO15047 1707 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-220ENST00000599716 DHX29Q7Z478 1369 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-220ENST00000599716 A2ML1A8K2U0 1454 aa13.88□□□□□ -0.19
SHKBP1-220ENST00000599716 CCDC141Q6ZP82 1450 aa13.88□□□□□ -0.19
SHKBP1-220ENST00000599716 RTEL1-TNFRSF6BF6WH68 1400 aa13.87□□□□□ -0.19
SHKBP1-220ENST00000599716 NEURL4Q96JN8 1562 aa13.87□□□□□ -0.19
SHKBP1-220ENST00000599716 TNRQ92752 1358 aa13.86□□□□□ -0.19
SHKBP1-220ENST00000599716 KDM5DQ9BY66 1539 aa13.85□□□□□ -0.19
SHKBP1-220ENST00000599716 POLR1AO95602 1720 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-220ENST00000599716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.84□□□□□ -0.19
SHKBP1-220ENST00000599716 VWDEQ8N2E2 1590 aa13.84□□□□□ -0.19
SHKBP1-220ENST00000599716 LOC105371045A0A1W2PR82 267 aa13.84□□□□□ -0.19
SHKBP1-220ENST00000599716 WASHC2CQ9Y4E1 1318 aa13.84□□□□□ -0.19
SHKBP1-220ENST00000599716 RNF17Q9BXT8 1623 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-220ENST00000599716 PZPP20742 1482 aa13.83□□□□□ -0.2
SHKBP1-220ENST00000599716 KANK4Q5T7N3 995 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-220ENST00000599716 CFAP65Q6ZU64 1925 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-220ENST00000599716 ARHGEF5Q12774 1597 aa13.79□□□□□ -0.2
SHKBP1-220ENST00000599716 MIA2Q96PC5 1412 aa13.79□□□□□ -0.2
SHKBP1-220ENST00000599716 LRRC9Q6ZRR7 1453 aa13.79□□□□□ -0.2
SHKBP1-220ENST00000599716 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
SHKBP1-220ENST00000599716 UGGT1Q9NYU2 1555 aa13.79□□□□□ -0.2
SHKBP1-220ENST00000599716 ABCC3O15438 1527 aa13.77□□□□□ -0.21
SHKBP1-220ENST00000599716 CEP152O94986 1710 aa13.77□□□□□ -0.21
SHKBP1-220ENST00000599716 TSPY4P0CV99 314 aa13.77□□□□□ -0.21
SHKBP1-220ENST00000599716 TSPY10P0CW01 314 aa13.77□□□□□ -0.21
SHKBP1-220ENST00000599716 ANKLE2Q86XL3 938 aa13.77□□□□□ -0.21
SHKBP1-220ENST00000599716 STRCP1A6NGW2 1772 aa13.76□□□□□ -0.21
SHKBP1-220ENST00000599716 SYNMO15061 1565 aa13.76□□□□□ -0.21
SHKBP1-220ENST00000599716 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-220ENST00000599716 MROH1Q8NDA8 1641 aa13.75□□□□□ -0.21
SHKBP1-220ENST00000599716 VPS8Q8N3P4 1428 aa13.75□□□□□ -0.21
SHKBP1-220ENST00000599716 THEMISQ8N1K5 641 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-220ENST00000599716 FAM135AQ9P2D6 1515 aa13.74□□□□□ -0.21
SHKBP1-220ENST00000599716 NLRP1Q9C000 1473 aa13.74□□□□□ -0.21
SHKBP1-220ENST00000599716 RSPH4AQ5TD94 716 aa13.74□□□□□ -0.21
SHKBP1-220ENST00000599716 MED14O60244 1454 aa13.74□□□□□ -0.21
SHKBP1-220ENST00000599716 FAM135BQ49AJ0 1406 aa13.73□□□□□ -0.21
SHKBP1-220ENST00000599716 IQGAP1P46940 1657 aa13.73□□□□□ -0.21
SHKBP1-220ENST00000599716 MAST1Q9Y2H9 1570 aa13.73□□□□□ -0.21
SHKBP1-220ENST00000599716 ERVK-7P63135 1459 aa13.73□□□□□ -0.21
SHKBP1-220ENST00000599716 DEPDC5O75140 1603 aa13.72□□□□□ -0.21
SHKBP1-220ENST00000599716 ZC3H13Q5T200 1668 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-220ENST00000599716 MYOM3Q5VTT5 1437 aa13.7□□□□□ -0.22
SHKBP1-220ENST00000599716 UBR1Q8IWV7 1749 aa13.7□□□□□ -0.22
SHKBP1-220ENST00000599716 EIF2AK4Q9P2K8 1649 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-220ENST00000599716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHKBP1-220ENST00000599716 LTKP29376 864 aa13.68□□□□□ -0.22
SHKBP1-220ENST00000599716 PIAS4Q8N2W9 510 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-220ENST00000599716 TRIM52Q96A61 297 aa13.68□□□□□ -0.22
SHKBP1-220ENST00000599716 RRP7BPQ9NSQ0 103 aa13.68□□□□□ -0.22
SHKBP1-220ENST00000599716 ZNF772Q68DY9 489 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-220ENST00000599716 KIF15Q9NS87 1388 aa13.67□□□□□ -0.22
SHKBP1-220ENST00000599716 ABCC5O15440 1437 aa13.66□□□□□ -0.22
SHKBP1-220ENST00000599716 DUOX2Q9NRD8 1548 aa13.66□□□□□ -0.22
SHKBP1-220ENST00000599716 CDK12Q9NYV4 1490 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-220ENST00000599716 CROCC2H7BZ55 1655 aa13.66□□□□□ -0.22
SHKBP1-220ENST00000599716 CHIC2Q9UKJ5 165 aa13.65□□□□□ -0.22
SHKBP1-220ENST00000599716 PTPN23Q9H3S7 1636 aa13.64□□□□□ -0.23
SHKBP1-220ENST00000599716 SCAF11Q99590 1463 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-220ENST00000599716 TXNDC2Q86VQ3 553 aa13.64□□□□□ -0.23
SHKBP1-220ENST00000599716 PIK3C2BO00750 1634 aa13.64□□□□□ -0.23
SHKBP1-220ENST00000599716 PRDM15P57071 1507 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-220ENST00000599716 JCADQ9P266 1359 aa13.63□□□□□ -0.23
SHKBP1-220ENST00000599716 XIRP1Q702N8 1843 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-220ENST00000599716 RBM33Q96EV2 1170 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-220ENST00000599716 MAP3K1Q13233 1512 aa13.62□□□□□ -0.23
SHKBP1-220ENST00000599716 ZRANB1Q9UGI0 708 aa13.61□□□□□ -0.23
SHKBP1-220ENST00000599716 EP400Q96L91 3159 aa13.61□□□□□ -0.23
SHKBP1-220ENST00000599716 DAPK1P53355 1430 aa13.61□□□□□ -0.23
SHKBP1-220ENST00000599716 ARHGAP23Q9P227 1491 aa13.61□□□□□ -0.23
SHKBP1-220ENST00000599716 RXRBP28702 533 aa13.6□□□□□ -0.23
SHKBP1-220ENST00000599716 SLIT1O75093 1534 aa13.59□□□□□ -0.23
SHKBP1-220ENST00000599716 ERBINQ96RT1 1412 aa13.59□□□□□ -0.23
SHKBP1-220ENST00000599716 FGD6Q6ZV73 1430 aa13.58□□□□□ -0.24
SHKBP1-220ENST00000599716 STAG3Q9UJ98 1225 aa13.58□□□□□ -0.24
SHKBP1-220ENST00000599716 ARHGAP31Q2M1Z3 1444 aa13.57□□□□□ -0.24
SHKBP1-220ENST00000599716 IDI1Q13907 227 aa13.57□□□□□ -0.24
SHKBP1-220ENST00000599716 SLC26A8Q96RN1 970 aa13.57□□□□□ -0.24
SHKBP1-220ENST00000599716 TMEM2Q9UHN6 1383 aa13.57□□□□□ -0.24
SHKBP1-220ENST00000599716 ROBO1Q9Y6N7 1651 aa13.56□□□□□ -0.24
SHKBP1-220ENST00000599716 EID1Q9Y6B2 187 aa13.56□□□□□ -0.24
SHKBP1-220ENST00000599716 SPATA31A6Q5VVP1 1343 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms