RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 KIF3BO15066 747 aa16.88■□□□□ 0.29
RFFL-209ENST00000581265 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
RFFL-209ENST00000581265 CCDC141Q6ZP82 1450 aa16.86■□□□□ 0.29
RFFL-209ENST00000581265 CAMSAP2Q08AD1 1489 aa16.86■□□□□ 0.29
RFFL-209ENST00000581265 PLA2R1Q13018 1463 aa16.86■□□□□ 0.29
RFFL-209ENST00000581265 TSPY4P0CV99 314 aa16.85■□□□□ 0.29
RFFL-209ENST00000581265 TSPY10P0CW01 314 aa16.85■□□□□ 0.29
RFFL-209ENST00000581265 VPS8Q8N3P4 1428 aa16.84■□□□□ 0.29
RFFL-209ENST00000581265 TCOF1Q13428 1488 aaKnown RBP16.83■□□□□ 0.28
RFFL-209ENST00000581265 CEP170BQ9Y4F5 1589 aaPredicted RBP16.83■□□□□ 0.28
RFFL-209ENST00000581265 MYO3AQ8NEV4 1616 aa16.82■□□□□ 0.28
RFFL-209ENST00000581265 LRRC9Q6ZRR7 1453 aa16.82■□□□□ 0.28
RFFL-209ENST00000581265 WASHC2CQ9Y4E1 1318 aa16.82■□□□□ 0.28
RFFL-209ENST00000581265 FBXO31Q5XUX0 539 aaPredicted RBP16.82■□□□□ 0.28
RFFL-209ENST00000581265 SENP3Q9H4L4 574 aaPredicted RBP16.82■□□□□ 0.28
RFFL-209ENST00000581265 ZNF142P52746 1687 aaPredicted RBP16.81■□□□□ 0.28
RFFL-209ENST00000581265 ARHGEF5Q12774 1597 aa16.81■□□□□ 0.28
RFFL-209ENST00000581265 A2ML1A8K2U0 1454 aa16.8■□□□□ 0.28
RFFL-209ENST00000581265 KANK4Q5T7N3 995 aaPredicted RBP16.8■□□□□ 0.28
RFFL-209ENST00000581265 FAM135AQ9P2D6 1515 aa16.8■□□□□ 0.28
RFFL-209ENST00000581265 TNRQ92752 1358 aa16.78■□□□□ 0.28
RFFL-209ENST00000581265 MAP3K1Q13233 1512 aa16.78■□□□□ 0.28
RFFL-209ENST00000581265 PZPP20742 1482 aa16.78■□□□□ 0.28
RFFL-209ENST00000581265 CPS1P31327 1500 aa16.77■□□□□ 0.28
RFFL-209ENST00000581265 KDM5DQ9BY66 1539 aa16.77■□□□□ 0.28
RFFL-209ENST00000581265 DNMT1P26358 1616 aaKnown RBP16.76■□□□□ 0.27
RFFL-209ENST00000581265 THEMISQ8N1K5 641 aaPredicted RBP16.75■□□□□ 0.27
RFFL-209ENST00000581265 MIA2Q96PC5 1412 aa16.75■□□□□ 0.27
RFFL-209ENST00000581265 SHANK2Q9UPX8 1470 aa16.73■□□□□ 0.27
RFFL-209ENST00000581265 MYOM3Q5VTT5 1437 aa16.72■□□□□ 0.27
RFFL-209ENST00000581265 ANKLE2Q86XL3 938 aa16.72■□□□□ 0.27
RFFL-209ENST00000581265 MAST1Q9Y2H9 1570 aa16.72■□□□□ 0.27
RFFL-209ENST00000581265 NLRP1Q9C000 1473 aa16.71■□□□□ 0.27
RFFL-209ENST00000581265 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.7■□□□□ 0.26
RFFL-209ENST00000581265 RNF17Q9BXT8 1623 aaKnown RBP16.67■□□□□ 0.26
RFFL-209ENST00000581265 ABCC3O15438 1527 aa16.66■□□□□ 0.26
RFFL-209ENST00000581265 APLP2Q06481 763 aa16.66■□□□□ 0.26
RFFL-209ENST00000581265 NEURL4Q96JN8 1562 aa16.66■□□□□ 0.26
RFFL-209ENST00000581265 UGGT1Q9NYU2 1555 aa16.66■□□□□ 0.26
RFFL-209ENST00000581265 MED14O60244 1454 aa16.65■□□□□ 0.26
RFFL-209ENST00000581265 EIF2AK4Q9P2K8 1649 aaKnown RBP16.64■□□□□ 0.25
RFFL-209ENST00000581265 DUOX2Q9NRD8 1548 aa16.64■□□□□ 0.25
RFFL-209ENST00000581265 POLR1AO95602 1720 aaPredicted RBP16.63■□□□□ 0.25
RFFL-209ENST00000581265 ABCC5O15440 1437 aa16.62■□□□□ 0.25
RFFL-209ENST00000581265 NPHP4O75161 1426 aaPredicted RBP16.62■□□□□ 0.25
RFFL-209ENST00000581265 ZC3H13Q5T200 1668 aaKnown RBP16.62■□□□□ 0.25
RFFL-209ENST00000581265 KIF15Q9NS87 1388 aa16.62■□□□□ 0.25
RFFL-209ENST00000581265 ERVK-7P63135 1459 aa16.61■□□□□ 0.25
RFFL-209ENST00000581265 DEPDC5O75140 1603 aa16.61■□□□□ 0.25
RFFL-209ENST00000581265 MROH1Q8NDA8 1641 aa16.61■□□□□ 0.25
RFFL-209ENST00000581265 RRP7BPQ9NSQ0 103 aa16.61■□□□□ 0.25
RFFL-209ENST00000581265 RGS17Q9UGC6 210 aaPredicted RBP16.6■□□□□ 0.25
RFFL-209ENST00000581265 ARHGAP31Q2M1Z3 1444 aa16.59■□□□□ 0.25
RFFL-209ENST00000581265 ERBINQ96RT1 1412 aa16.58■□□□□ 0.24
RFFL-209ENST00000581265 VWDEQ8N2E2 1590 aa16.58■□□□□ 0.24
RFFL-209ENST00000581265 PTPN23Q9H3S7 1636 aa16.56■□□□□ 0.24
RFFL-209ENST00000581265 DAPK1P53355 1430 aa16.56■□□□□ 0.24
RFFL-209ENST00000581265 FGD6Q6ZV73 1430 aa16.56■□□□□ 0.24
RFFL-209ENST00000581265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.24
RFFL-209ENST00000581265 ALKQ9UM73 1620 aa16.55■□□□□ 0.24
RFFL-209ENST00000581265 PRDM15P57071 1507 aaPredicted RBP16.55■□□□□ 0.24
RFFL-209ENST00000581265 CFAP65Q6ZU64 1925 aaKnown RBP16.55■□□□□ 0.24
RFFL-209ENST00000581265 LTKP29376 864 aa16.54■□□□□ 0.24
RFFL-209ENST00000581265 POTEAQ6S8J7 498 aa16.54■□□□□ 0.24
RFFL-209ENST00000581265 TXNDC2Q86VQ3 553 aa16.54■□□□□ 0.24
RFFL-209ENST00000581265 CEP152O94986 1710 aa16.53■□□□□ 0.24
RFFL-209ENST00000581265 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
RFFL-209ENST00000581265 CHIC2Q9UKJ5 165 aa16.53■□□□□ 0.24
RFFL-209ENST00000581265 LRRC7Q96NW7 1537 aa16.53■□□□□ 0.24
RFFL-209ENST00000581265 IQGAP1P46940 1657 aa16.53■□□□□ 0.24
RFFL-209ENST00000581265 KANK1Q14678 1352 aa16.52■□□□□ 0.24
RFFL-209ENST00000581265 ARHGAP23Q9P227 1491 aa16.52■□□□□ 0.23
RFFL-209ENST00000581265 CROCC2H7BZ55 1655 aa16.52■□□□□ 0.23
RFFL-209ENST00000581265 SCAF11Q99590 1463 aaKnown RBP16.51■□□□□ 0.23
RFFL-209ENST00000581265 EID1Q9Y6B2 187 aa16.51■□□□□ 0.23
RFFL-209ENST00000581265 UBR1Q8IWV7 1749 aa16.5■□□□□ 0.23
RFFL-209ENST00000581265 SLIT1O75093 1534 aa16.5■□□□□ 0.23
RFFL-209ENST00000581265 IDI1Q13907 227 aa16.49■□□□□ 0.23
RFFL-209ENST00000581265 LMTK2Q8IWU2 1503 aa16.48■□□□□ 0.23
RFFL-209ENST00000581265 TMEM2Q9UHN6 1383 aa16.48■□□□□ 0.23
RFFL-209ENST00000581265 STAG3Q9UJ98 1225 aa16.47■□□□□ 0.23
RFFL-209ENST00000581265 SYNMO15061 1565 aa16.47■□□□□ 0.23
RFFL-209ENST00000581265 STRCP1A6NGW2 1772 aa16.46■□□□□ 0.23
RFFL-209ENST00000581265 ADGRL2O95490 1459 aa16.44■□□□□ 0.22
RFFL-209ENST00000581265 FAM50AQ14320 339 aaKnown RBP16.44■□□□□ 0.22
RFFL-209ENST00000581265 SLC52A1Q9NWF4 448 aa16.44■□□□□ 0.22
RFFL-209ENST00000581265 NOS1P29475 1434 aa16.44■□□□□ 0.22
RFFL-209ENST00000581265 PIK3C2BO00750 1634 aa16.43■□□□□ 0.22
RFFL-209ENST00000581265 FAM135BQ49AJ0 1406 aa16.41■□□□□ 0.22
RFFL-209ENST00000581265 ANKRD50Q9ULJ7 1429 aa16.41■□□□□ 0.22
RFFL-209ENST00000581265 KDM5AP29375 1690 aaKnown RBP16.4■□□□□ 0.22
RFFL-209ENST00000581265 EFCAB6Q5THR3 1501 aa16.4■□□□□ 0.22
RFFL-209ENST00000581265 KCNA6P17658 529 aa16.39■□□□□ 0.21
RFFL-209ENST00000581265 RPRD2Q5VT52 1461 aaKnown RBP16.37■□□□□ 0.21
RFFL-209ENST00000581265 SLC26A8Q96RN1 970 aa16.37■□□□□ 0.21
RFFL-209ENST00000581265 TET3O43151 1660 aa16.37■□□□□ 0.21
RFFL-209ENST00000581265 SETD1AO15047 1707 aaKnown RBP16.36■□□□□ 0.21
RFFL-209ENST00000581265 MEX3CQ5U5Q3 659 aaKnown RBP16.35■□□□□ 0.21
RFFL-209ENST00000581265 UPF1Q92900 1129 aaKnown RBP eCLIP16.35■□□□□ 0.21
RFFL-209ENST00000581265 TMEM94Q12767 1356 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms