RNA–Protein interactions for RNA: ENST00000561662.1

COMMD4-204, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 482 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-204ENST00000561662 NEURL4Q96JN8 1562 aa29.63■■■□□ 2.33
COMMD4-204ENST00000561662 TNRQ92752 1358 aa29.62■■■□□ 2.33
COMMD4-204ENST00000561662 SHANK2Q9UPX8 1470 aa29.61■■■□□ 2.33
COMMD4-204ENST00000561662 POLR1AO95602 1720 aaPredicted RBP29.59■■■□□ 2.33
COMMD4-204ENST00000561662 KIF3BO15066 747 aa29.58■■■□□ 2.33
COMMD4-204ENST00000561662 CPS1P31327 1500 aa29.58■■■□□ 2.33
COMMD4-204ENST00000561662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.58■■■□□ 2.33
COMMD4-204ENST00000561662 MBD5Q9P267 1494 aa29.57■■■□□ 2.32
COMMD4-204ENST00000561662 DHX29Q7Z478 1369 aaKnown RBP29.56■■■□□ 2.32
COMMD4-204ENST00000561662 TIAM1Q13009 1591 aa29.56■■■□□ 2.32
COMMD4-204ENST00000561662 PHF23Q9BUL5 403 aaPredicted RBP29.55■■■□□ 2.32
COMMD4-204ENST00000561662 ANKLE2Q86XL3 938 aa29.53■■■□□ 2.32
COMMD4-204ENST00000561662 WASHC2CQ9Y4E1 1318 aa29.5■■■□□ 2.31
COMMD4-204ENST00000561662 PZPP20742 1482 aa29.5■■■□□ 2.31
COMMD4-204ENST00000561662 RTEL1-TNFRSF6BF6WH68 1400 aa29.5■■■□□ 2.31
COMMD4-204ENST00000561662 VWDEQ8N2E2 1590 aa29.5■■■□□ 2.31
COMMD4-204ENST00000561662 KDM5DQ9BY66 1539 aa29.48■■■□□ 2.31
COMMD4-204ENST00000561662 ALKQ9UM73 1620 aa29.48■■■□□ 2.31
COMMD4-204ENST00000561662 NPHP4O75161 1426 aaPredicted RBP29.46■■■□□ 2.31
COMMD4-204ENST00000561662 THEMISQ8N1K5 641 aaPredicted RBP29.46■■■□□ 2.31
COMMD4-204ENST00000561662 MIA2Q96PC5 1412 aa29.45■■■□□ 2.3
COMMD4-204ENST00000561662 UGGT1Q9NYU2 1555 aa29.43■■■□□ 2.3
COMMD4-204ENST00000561662 EHBP1L1Q8N3D4 1523 aa29.41■■■□□ 2.3
COMMD4-204ENST00000561662 CCDC141Q6ZP82 1450 aa29.4■■■□□ 2.3
COMMD4-204ENST00000561662 FAM135AQ9P2D6 1515 aa29.4■■■□□ 2.3
COMMD4-204ENST00000561662 NLRP1Q9C000 1473 aa29.38■■■□□ 2.29
COMMD4-204ENST00000561662 CEP162Q5TB80 1403 aa29.37■■■□□ 2.29
COMMD4-204ENST00000561662 MED14O60244 1454 aa29.37■■■□□ 2.29
COMMD4-204ENST00000561662 CAMSAP2Q08AD1 1489 aa29.36■■■□□ 2.29
COMMD4-204ENST00000561662 STRCP1A6NGW2 1772 aa29.36■■■□□ 2.29
COMMD4-204ENST00000561662 IQGAP1P46940 1657 aa29.35■■■□□ 2.29
COMMD4-204ENST00000561662 DEPDC5O75140 1603 aa29.34■■■□□ 2.29
COMMD4-204ENST00000561662 LRRC7Q96NW7 1537 aa29.34■■■□□ 2.29
COMMD4-204ENST00000561662 NCOA2Q15596 1464 aa29.29■■■□□ 2.28
COMMD4-204ENST00000561662 RNF17Q9BXT8 1623 aaKnown RBP29.25■■■□□ 2.27
COMMD4-204ENST00000561662 TSPY4P0CV99 314 aa29.25■■■□□ 2.27
COMMD4-204ENST00000561662 TSPY10P0CW01 314 aa29.25■■■□□ 2.27
COMMD4-204ENST00000561662 RSPH4AQ5TD94 716 aa29.24■■■□□ 2.27
COMMD4-204ENST00000561662 RGS17Q9UGC6 210 aaPredicted RBP29.24■■■□□ 2.27
COMMD4-204ENST00000561662 ABCC3O15438 1527 aa29.24■■■□□ 2.27
COMMD4-204ENST00000561662 ERVK-7P63135 1459 aa29.21■■■□□ 2.27
COMMD4-204ENST00000561662 SYNMO15061 1565 aa29.21■■■□□ 2.27
COMMD4-204ENST00000561662 CFAP65Q6ZU64 1925 aaKnown RBP29.18■■■□□ 2.26
COMMD4-204ENST00000561662 ARHGEF5Q12774 1597 aa29.18■■■□□ 2.26
COMMD4-204ENST00000561662 ZC3H13Q5T200 1668 aaKnown RBP29.17■■■□□ 2.26
COMMD4-204ENST00000561662 LTKP29376 864 aa29.16■■■□□ 2.26
COMMD4-204ENST00000561662 SCAF11Q99590 1463 aaKnown RBP29.14■■■□□ 2.26
COMMD4-204ENST00000561662 UBR1Q8IWV7 1749 aa29.14■■■□□ 2.25
COMMD4-204ENST00000561662 TXNDC2Q86VQ3 553 aa29.13■■■□□ 2.25
COMMD4-204ENST00000561662 CEP152O94986 1710 aa29.12■■■□□ 2.25
COMMD4-204ENST00000561662 MROH1Q8NDA8 1641 aa29.1■■■□□ 2.25
COMMD4-204ENST00000561662 XIRP1Q702N8 1843 aaKnown RBP29.08■■■□□ 2.25
COMMD4-204ENST00000561662 POTEAQ6S8J7 498 aa29.07■■■□□ 2.24
COMMD4-204ENST00000561662 RBM33Q96EV2 1170 aaKnown RBP29.04■■■□□ 2.24
COMMD4-204ENST00000561662 EIF2AK4Q9P2K8 1649 aaKnown RBP29.04■■■□□ 2.24
COMMD4-204ENST00000561662 MAST1Q9Y2H9 1570 aa29.04■■■□□ 2.24
COMMD4-204ENST00000561662 ARHGAP23Q9P227 1491 aa29.04■■■□□ 2.24
COMMD4-204ENST00000561662 EID1Q9Y6B2 187 aa29.02■■■□□ 2.24
COMMD4-204ENST00000561662 SLIT1O75093 1534 aa29.01■■■□□ 2.23
COMMD4-204ENST00000561662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.99■■■□□ 2.23
COMMD4-204ENST00000561662 TMEM94Q12767 1356 aa28.98■■■□□ 2.23
COMMD4-204ENST00000561662 LRRC9Q6ZRR7 1453 aa28.97■■■□□ 2.23
COMMD4-204ENST00000561662 FAM135BQ49AJ0 1406 aa28.97■■■□□ 2.23
COMMD4-204ENST00000561662 STAG3Q9UJ98 1225 aa28.96■■■□□ 2.23
COMMD4-204ENST00000561662 PIK3C2BO00750 1634 aa28.95■■■□□ 2.23
COMMD4-204ENST00000561662 KANK4Q5T7N3 995 aaPredicted RBP28.95■■■□□ 2.22
COMMD4-204ENST00000561662 TMEM2Q9UHN6 1383 aa28.94■■■□□ 2.22
COMMD4-204ENST00000561662 DUOX2Q9NRD8 1548 aa28.94■■■□□ 2.22
COMMD4-204ENST00000561662 SLC26A8Q96RN1 970 aa28.93■■■□□ 2.22
COMMD4-204ENST00000561662 RRP7BPQ9NSQ0 103 aa28.93■■■□□ 2.22
COMMD4-204ENST00000561662 ROBO1Q9Y6N7 1651 aa28.91■■■□□ 2.22
COMMD4-204ENST00000561662 PROSER2Q86WR7 435 aaPredicted RBP28.91■■■□□ 2.22
COMMD4-204ENST00000561662 KIF15Q9NS87 1388 aa28.9■■■□□ 2.22
COMMD4-204ENST00000561662 ARHGAP31Q2M1Z3 1444 aa28.9■■■□□ 2.22
COMMD4-204ENST00000561662 PRDM15P57071 1507 aaPredicted RBP28.89■■■□□ 2.21
COMMD4-204ENST00000561662 MYOM3Q5VTT5 1437 aa28.87■■■□□ 2.21
COMMD4-204ENST00000561662 SETD1AO15047 1707 aaKnown RBP28.87■■■□□ 2.21
COMMD4-204ENST00000561662 KCNA6P17658 529 aa28.87■■■□□ 2.21
COMMD4-204ENST00000561662 MAP3K1Q13233 1512 aa28.86■■■□□ 2.21
COMMD4-204ENST00000561662 IDI1Q13907 227 aa28.85■■■□□ 2.21
COMMD4-204ENST00000561662 EFCAB6Q5THR3 1501 aa28.84■■■□□ 2.21
COMMD4-204ENST00000561662 BCANQ96GW7 911 aa28.82■■■□□ 2.2
COMMD4-204ENST00000561662 VPS8Q8N3P4 1428 aa28.81■■■□□ 2.2
COMMD4-204ENST00000561662 ERBINQ96RT1 1412 aa28.81■■■□□ 2.2
COMMD4-204ENST00000561662 ABCC5O15440 1437 aa28.79■■■□□ 2.2
COMMD4-204ENST00000561662 TET3O43151 1660 aa28.79■■■□□ 2.2
COMMD4-204ENST00000561662 KANK1Q14678 1352 aa28.78■■■□□ 2.2
COMMD4-204ENST00000561662 MSH6P52701 1360 aa28.75■■■□□ 2.19
COMMD4-204ENST00000561662 SLAIN2Q9P270 581 aa28.75■■■□□ 2.19
COMMD4-204ENST00000561662 CHIC2Q9UKJ5 165 aa28.75■■■□□ 2.19
COMMD4-204ENST00000561662 PHLPP1O60346 1717 aa28.74■■■□□ 2.19
COMMD4-204ENST00000561662 CROCC2H7BZ55 1655 aa28.74■■■□□ 2.19
COMMD4-204ENST00000561662 LOC105371045A0A1W2PR82 267 aa28.72■■■□□ 2.19
COMMD4-204ENST00000561662 JCADQ9P266 1359 aa28.71■■■□□ 2.19
COMMD4-204ENST00000561662 NKTRP30414 1462 aaKnown RBP28.71■■■□□ 2.19
COMMD4-204ENST00000561662 NWD1Q149M9 1564 aa28.7■■■□□ 2.18
COMMD4-204ENST00000561662 DAPK1P53355 1430 aa28.69■■■□□ 2.18
COMMD4-204ENST00000561662 KDM5AP29375 1690 aaKnown RBP28.69■■■□□ 2.18
COMMD4-204ENST00000561662 ADGRB3O60242 1522 aa28.69■■■□□ 2.18
COMMD4-204ENST00000561662 PTPN23Q9H3S7 1636 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms