RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, human

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-225	ENST00000560005	CPS1	P31327	1500 aa		32.8	■■■□□ 2.84
PSEN1-225	ENST00000560005	DHX29	Q7Z478	1369 aa	Known RBP	32.8	■■■□□ 2.84
PSEN1-225	ENST00000560005	TNR	Q92752	1358 aa		32.8	■■■□□ 2.84
PSEN1-225	ENST00000560005	MED1	Q15648	1581 aa	Predicted RBP	32.79	■■■□□ 2.84
PSEN1-225	ENST00000560005	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.79	■■■□□ 2.84
PSEN1-225	ENST00000560005	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.79	■■■□□ 2.84
PSEN1-225	ENST00000560005	TOM1	O60784	492 aa		32.78	■■■□□ 2.84
PSEN1-225	ENST00000560005	SHANK2	Q9UPX8	1470 aa		32.78	■■■□□ 2.84
PSEN1-225	ENST00000560005	KIF3B	O15066	747 aa		32.74	■■■□□ 2.83
PSEN1-225	ENST00000560005	PZP	P20742	1482 aa		32.74	■■■□□ 2.83
PSEN1-225	ENST00000560005	EHBP1L1	Q8N3D4	1523 aa		32.72	■■■□□ 2.83
PSEN1-225	ENST00000560005	KDM5D	Q9BY66	1539 aa		32.72	■■■□□ 2.83
PSEN1-225	ENST00000560005	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.7	■■■□□ 2.82
PSEN1-225	ENST00000560005	ANKLE2	Q86XL3	938 aa		32.69	■■■□□ 2.82
PSEN1-225	ENST00000560005	VWDE	Q8N2E2	1590 aa		32.67	■■■□□ 2.82
PSEN1-225	ENST00000560005	WASHC2C	Q9Y4E1	1318 aa		32.67	■■■□□ 2.82
PSEN1-225	ENST00000560005	CEP162	Q5TB80	1403 aa		32.67	■■■□□ 2.82
PSEN1-225	ENST00000560005	FAM135A	Q9P2D6	1515 aa		32.67	■■■□□ 2.82
PSEN1-225	ENST00000560005	CCDC141	Q6ZP82	1450 aa		32.66	■■■□□ 2.82
PSEN1-225	ENST00000560005	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.64	■■■□□ 2.82
PSEN1-225	ENST00000560005	MIA2	Q96PC5	1412 aa		32.63	■■■□□ 2.81
PSEN1-225	ENST00000560005	UGGT1	Q9NYU2	1555 aa		32.62	■■■□□ 2.81
PSEN1-225	ENST00000560005	NLRP1	Q9C000	1473 aa		32.61	■■■□□ 2.81
PSEN1-225	ENST00000560005	NPHP4	O75161	1426 aa	Predicted RBP	32.61	■■■□□ 2.81
PSEN1-225	ENST00000560005	ALK	Q9UM73	1620 aa		32.6	■■■□□ 2.81
PSEN1-225	ENST00000560005	CAMSAP2	Q08AD1	1489 aa		32.6	■■■□□ 2.81
PSEN1-225	ENST00000560005	MED14	O60244	1454 aa		32.59	■■■□□ 2.81
PSEN1-225	ENST00000560005	DEPDC5	O75140	1603 aa		32.58	■■■□□ 2.81
PSEN1-225	ENST00000560005	PHF23	Q9BUL5	403 aa	Predicted RBP	32.57	■■■□□ 2.8
PSEN1-225	ENST00000560005	RSPH4A	Q5TD94	716 aa		32.54	■■■□□ 2.8
PSEN1-225	ENST00000560005	NCOA2	Q15596	1464 aa		32.54	■■■□□ 2.8
PSEN1-225	ENST00000560005	IQGAP1	P46940	1657 aa		32.53	■■■□□ 2.8
PSEN1-225	ENST00000560005	SENP3	Q9H4L4	574 aa	Predicted RBP	32.5	■■■□□ 2.79
PSEN1-225	ENST00000560005	STRCP1	A6NGW2	1772 aa		32.47	■■■□□ 2.79
PSEN1-225	ENST00000560005	LRRC7	Q96NW7	1537 aa		32.46	■■■□□ 2.79
PSEN1-225	ENST00000560005	ARHGEF5	Q12774	1597 aa		32.46	■■■□□ 2.79
PSEN1-225	ENST00000560005	TSPY4	P0CV99	314 aa		32.45	■■■□□ 2.79
PSEN1-225	ENST00000560005	TSPY10	P0CW01	314 aa		32.45	■■■□□ 2.79
PSEN1-225	ENST00000560005	ABCC3	O15438	1527 aa		32.44	■■■□□ 2.78
PSEN1-225	ENST00000560005	RNF17	Q9BXT8	1623 aa	Known RBP	32.43	■■■□□ 2.78
PSEN1-225	ENST00000560005	SYNM	O15061	1565 aa		32.41	■■■□□ 2.78
PSEN1-225	ENST00000560005	ZC3H13	Q5T200	1668 aa	Known RBP	32.4	■■■□□ 2.78
PSEN1-225	ENST00000560005	ERVK-7	P63135	1459 aa		32.39	■■■□□ 2.78
PSEN1-225	ENST00000560005	MAST1	Q9Y2H9	1570 aa		32.32	■■■□□ 2.76
PSEN1-225	ENST00000560005	UBR1	Q8IWV7	1749 aa		32.31	■■■□□ 2.76
PSEN1-225	ENST00000560005	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.31	■■■□□ 2.76
PSEN1-225	ENST00000560005	LOC105371045	A0A1W2PR82	267 aa		32.31	■■■□□ 2.76
PSEN1-225	ENST00000560005	SCAF11	Q99590	1463 aa	Known RBP	32.3	■■■□□ 2.76
PSEN1-225	ENST00000560005	MROH1	Q8NDA8	1641 aa		32.3	■■■□□ 2.76
PSEN1-225	ENST00000560005	CEP152	O94986	1710 aa		32.28	■■■□□ 2.76
PSEN1-225	ENST00000560005	CFAP65	Q6ZU64	1925 aa	Known RBP	32.28	■■■□□ 2.76
PSEN1-225	ENST00000560005	LTK	P29376	864 aa		32.24	■■■□□ 2.75
PSEN1-225	ENST00000560005	RGS17	Q9UGC6	210 aa	Predicted RBP	32.24	■■■□□ 2.75
PSEN1-225	ENST00000560005	TXNDC2	Q86VQ3	553 aa		32.22	■■■□□ 2.75
PSEN1-225	ENST00000560005	ARHGAP23	Q9P227	1491 aa		32.22	■■■□□ 2.75
PSEN1-225	ENST00000560005	LRRC9	Q6ZRR7	1453 aa		32.21	■■■□□ 2.75
PSEN1-225	ENST00000560005	SLIT1	O75093	1534 aa		32.21	■■■□□ 2.75
PSEN1-225	ENST00000560005	XIRP1	Q702N8	1843 aa	Known RBP	32.19	■■■□□ 2.74
PSEN1-225	ENST00000560005	DUOX2	Q9NRD8	1548 aa		32.16	■■■□□ 2.74
PSEN1-225	ENST00000560005	EID1	Q9Y6B2	187 aa		32.14	■■■□□ 2.74
PSEN1-225	ENST00000560005	ARHGAP31	Q2M1Z3	1444 aa		32.12	■■■□□ 2.73
PSEN1-225	ENST00000560005	PRDM15	P57071	1507 aa	Predicted RBP	32.1	■■■□□ 2.73
PSEN1-225	ENST00000560005	FAM135B	Q49AJ0	1406 aa		32.09	■■■□□ 2.73
PSEN1-225	ENST00000560005	MYOM3	Q5VTT5	1437 aa		32.09	■■■□□ 2.73
PSEN1-225	ENST00000560005	PIK3C2B	O00750	1634 aa		32.09	■■■□□ 2.73
PSEN1-225	ENST00000560005	VPS8	Q8N3P4	1428 aa		32.08	■■■□□ 2.73
PSEN1-225	ENST00000560005	KIF15	Q9NS87	1388 aa		32.07	■■■□□ 2.73
PSEN1-225	ENST00000560005	TMEM2	Q9UHN6	1383 aa		32.07	■■■□□ 2.73
PSEN1-225	ENST00000560005	KANK4	Q5T7N3	995 aa	Predicted RBP	32.07	■■■□□ 2.72
PSEN1-225	ENST00000560005	TMEM94	Q12767	1356 aa		32.05	■■■□□ 2.72
PSEN1-225	ENST00000560005	STAG3	Q9UJ98	1225 aa		32.04	■■■□□ 2.72
PSEN1-225	ENST00000560005	ERBIN	Q96RT1	1412 aa		32.03	■■■□□ 2.72
PSEN1-225	ENST00000560005	POTEA	Q6S8J7	498 aa		32.03	■■■□□ 2.72
PSEN1-225	ENST00000560005	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.03	■■■□□ 2.72	2e-7	■□□□□ 10.6
PSEN1-225	ENST00000560005	RRP7BP	Q9NSQ0	103 aa		32.02	■■■□□ 2.72
PSEN1-225	ENST00000560005	EFCAB6	Q5THR3	1501 aa		31.99	■■■□□ 2.71
PSEN1-225	ENST00000560005	ROBO1	Q9Y6N7	1651 aa		31.99	■■■□□ 2.71
PSEN1-225	ENST00000560005	KCNA6	P17658	529 aa		31.98	■■■□□ 2.71
PSEN1-225	ENST00000560005	MAP3K1	Q13233	1512 aa		31.97	■■■□□ 2.71
PSEN1-225	ENST00000560005	RBM33	Q96EV2	1170 aa	Known RBP	31.97	■■■□□ 2.71
PSEN1-225	ENST00000560005	ABCC5	O15440	1437 aa		31.97	■■■□□ 2.71
PSEN1-225	ENST00000560005	CROCC2	H7BZ55	1655 aa		31.96	■■■□□ 2.71
PSEN1-225	ENST00000560005	SLC26A8	Q96RN1	970 aa		31.96	■■■□□ 2.71
PSEN1-225	ENST00000560005	IDI1	Q13907	227 aa		31.95	■■■□□ 2.71
PSEN1-225	ENST00000560005	PROSER2	Q86WR7	435 aa	Predicted RBP	31.95	■■■□□ 2.71
PSEN1-225	ENST00000560005	KDM5A	P29375	1690 aa	Known RBP	31.95	■■■□□ 2.7
PSEN1-225	ENST00000560005	KANK1	Q14678	1352 aa		31.94	■■■□□ 2.7
PSEN1-225	ENST00000560005	TET3	O43151	1660 aa		31.92	■■■□□ 2.7
PSEN1-225	ENST00000560005	LMTK2	Q8IWU2	1503 aa		31.88	■■■□□ 2.69
PSEN1-225	ENST00000560005	PTPN23	Q9H3S7	1636 aa		31.87	■■■□□ 2.69
PSEN1-225	ENST00000560005	NKTR	P30414	1462 aa	Known RBP	31.86	■■■□□ 2.69
PSEN1-225	ENST00000560005	DAPK1	P53355	1430 aa		31.86	■■■□□ 2.69
PSEN1-225	ENST00000560005	NWD1	Q149M9	1564 aa		31.85	■■■□□ 2.69
PSEN1-225	ENST00000560005	ADGRB3	O60242	1522 aa		31.84	■■■□□ 2.69
PSEN1-225	ENST00000560005	MSH6	P52701	1360 aa		31.83	■■■□□ 2.69
PSEN1-225	ENST00000560005	BCAN	Q96GW7	911 aa		31.82	■■■□□ 2.68
PSEN1-225	ENST00000560005	NOS1	P29475	1434 aa		31.82	■■■□□ 2.68
PSEN1-225	ENST00000560005	SETD1A	O15047	1707 aa	Known RBP	31.81	■■■□□ 2.68
PSEN1-225	ENST00000560005	PHLPP1	O60346	1717 aa		31.8	■■■□□ 2.68
PSEN1-225	ENST00000560005	SLAIN2	Q9P270	581 aa		31.79	■■■□□ 2.68

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms