RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 PTPRKQ15262 1439 aa8.46□□□□□ -1.05
SPG11-208ENST00000558155 CCDC18Q5T9S5 1454 aa8.46□□□□□ -1.05
SPG11-208ENST00000558155 CASKIN1Q8WXD9 1431 aa8.46□□□□□ -1.06
SPG11-208ENST00000558155 TCOF1Q13428 1488 aaKnown RBP8.45□□□□□ -1.06
SPG11-208ENST00000558155 SAMD9LQ8IVG5 1584 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 ANKLE2Q86XL3 938 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 THEMISQ8N1K5 641 aaPredicted RBP8.45□□□□□ -1.06
SPG11-208ENST00000558155 CDC42BPAQ5VT25 1732 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 LRRIQ1Q96JM4 1722 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 KIAA1107Q9UPP5 1409 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 A2MP01023 1474 aa8.45□□□□□ -1.06
SPG11-208ENST00000558155 CLTCQ00610 1675 aaKnown RBP8.44□□□□□ -1.06
SPG11-208ENST00000558155 PLEKHH2Q8IVE3 1493 aa8.44□□□□□ -1.06
SPG11-208ENST00000558155 CEP170BQ9Y4F5 1589 aaPredicted RBP8.44□□□□□ -1.06
SPG11-208ENST00000558155 SAMD1Q6SPF0 538 aaPredicted RBP8.43□□□□□ -1.06
SPG11-208ENST00000558155 A2ML1A8K2U0 1454 aa8.43□□□□□ -1.06
SPG11-208ENST00000558155 GPATCH8Q9UKJ3 1502 aaKnown RBP8.43□□□□□ -1.06
SPG11-208ENST00000558155 ZNF142P52746 1687 aaPredicted RBP8.43□□□□□ -1.06
SPG11-208ENST00000558155 CCNB3Q8WWL7 1395 aa8.42□□□□□ -1.06
SPG11-208ENST00000558155 SHANK2Q9UPX8 1470 aa8.42□□□□□ -1.06
SPG11-208ENST00000558155 CPS1P31327 1500 aa8.42□□□□□ -1.06
SPG11-208ENST00000558155 ATP7AQ04656 1500 aa8.42□□□□□ -1.06
SPG11-208ENST00000558155 MYO3AQ8NEV4 1616 aa8.42□□□□□ -1.06
SPG11-208ENST00000558155 MED1Q15648 1581 aaPredicted RBP8.41□□□□□ -1.06
SPG11-208ENST00000558155 SYCP2Q9BX26 1530 aa8.41□□□□□ -1.06
SPG11-208ENST00000558155 FBXO31Q5XUX0 539 aaPredicted RBP8.41□□□□□ -1.06
SPG11-208ENST00000558155 DNMT1P26358 1616 aaKnown RBP8.4□□□□□ -1.06
SPG11-208ENST00000558155 TNRQ92752 1358 aa8.4□□□□□ -1.06
SPG11-208ENST00000558155 WASHC2CQ9Y4E1 1318 aa8.4□□□□□ -1.06
SPG11-208ENST00000558155 KIF3BO15066 747 aa8.4□□□□□ -1.06
SPG11-208ENST00000558155 RSPH4AQ5TD94 716 aa8.4□□□□□ -1.06
SPG11-208ENST00000558155 DHX29Q7Z478 1369 aaKnown RBP8.39□□□□□ -1.07
SPG11-208ENST00000558155 ADGBQ8N7X0 1667 aa8.39□□□□□ -1.07
SPG11-208ENST00000558155 PLXNC1O60486 1568 aa8.39□□□□□ -1.07
SPG11-208ENST00000558155 RTEL1-TNFRSF6BF6WH68 1400 aa8.38□□□□□ -1.07
SPG11-208ENST00000558155 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.38□□□□□ -1.07
SPG11-208ENST00000558155 CHRDL2Q6WN34 429 aa8.38□□□□□ -1.07
SPG11-208ENST00000558155 RBM42Q9BTD8 480 aaKnown RBP8.38□□□□□ -1.07
SPG11-208ENST00000558155 FYCO1Q9BQS8 1478 aa8.38□□□□□ -1.07
SPG11-208ENST00000558155 MTUS2Q5JR59 1369 aa8.37□□□□□ -1.07
SPG11-208ENST00000558155 ZNF644Q9H582 1327 aaPredicted RBP8.37□□□□□ -1.07
SPG11-208ENST00000558155 INO80Q9ULG1 1556 aaPredicted RBP8.37□□□□□ -1.07
SPG11-208ENST00000558155 POLR1AO95602 1720 aaPredicted RBP8.37□□□□□ -1.07
SPG11-208ENST00000558155 MIA2Q96PC5 1412 aa8.37□□□□□ -1.07
SPG11-208ENST00000558155 NPHP4O75161 1426 aaPredicted RBP8.36□□□□□ -1.07
SPG11-208ENST00000558155 FAM135AQ9P2D6 1515 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 MED14O60244 1454 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 PZPP20742 1482 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 NLRP1Q9C000 1473 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 TSPY4P0CV99 314 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 TSPY10P0CW01 314 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 POLA2Q14181 598 aa8.35□□□□□ -1.07
SPG11-208ENST00000558155 MBD5Q9P267 1494 aa8.34□□□□□ -1.07
SPG11-208ENST00000558155 VWDEQ8N2E2 1590 aa8.34□□□□□ -1.07
SPG11-208ENST00000558155 NEURL4Q96JN8 1562 aa8.34□□□□□ -1.07
SPG11-208ENST00000558155 UGGT1Q9NYU2 1555 aa8.33□□□□□ -1.08
SPG11-208ENST00000558155 RGS17Q9UGC6 210 aaPredicted RBP8.33□□□□□ -1.08
SPG11-208ENST00000558155 DEPDC5O75140 1603 aa8.32□□□□□ -1.08
SPG11-208ENST00000558155 LRRC7Q96NW7 1537 aa8.32□□□□□ -1.08
SPG11-208ENST00000558155 KDM5DQ9BY66 1539 aa8.32□□□□□ -1.08
SPG11-208ENST00000558155 TXNDC2Q86VQ3 553 aa8.31□□□□□ -1.08
SPG11-208ENST00000558155 ALKQ9UM73 1620 aa8.3□□□□□ -1.08
SPG11-208ENST00000558155 EID1Q9Y6B2 187 aa8.3□□□□□ -1.08
SPG11-208ENST00000558155 IQGAP1P46940 1657 aa8.3□□□□□ -1.08
SPG11-208ENST00000558155 MYCNP04198 464 aaPredicted RBP8.29□□□□□ -1.08
SPG11-208ENST00000558155 CCDC141Q6ZP82 1450 aa8.29□□□□□ -1.08
SPG11-208ENST00000558155 CFAP65Q6ZU64 1925 aaKnown RBP8.29□□□□□ -1.08
SPG11-208ENST00000558155 CEP162Q5TB80 1403 aa8.29□□□□□ -1.08
SPG11-208ENST00000558155 TIAM1Q13009 1591 aa8.28□□□□□ -1.08
SPG11-208ENST00000558155 LTKP29376 864 aa8.28□□□□□ -1.08
SPG11-208ENST00000558155 POTEAQ6S8J7 498 aa8.28□□□□□ -1.08
SPG11-208ENST00000558155 FAM135BQ49AJ0 1406 aa8.28□□□□□ -1.08
SPG11-208ENST00000558155 STRCP1A6NGW2 1772 aa8.27□□□□□ -1.08
SPG11-208ENST00000558155 STAG3Q9UJ98 1225 aa8.27□□□□□ -1.09
SPG11-208ENST00000558155 RNF17Q9BXT8 1623 aaKnown RBP8.27□□□□□ -1.09
SPG11-208ENST00000558155 SYNMO15061 1565 aa8.27□□□□□ -1.09
SPG11-208ENST00000558155 EHBP1L1Q8N3D4 1523 aa8.26□□□□□ -1.09
SPG11-208ENST00000558155 PROSER2Q86WR7 435 aaPredicted RBP8.26□□□□□ -1.09
SPG11-208ENST00000558155 ATF5Q9Y2D1 282 aaPredicted RBP8.26□□□□□ -1.09
SPG11-208ENST00000558155 SCAF11Q99590 1463 aaKnown RBP8.26□□□□□ -1.09
SPG11-208ENST00000558155 KCNA6P17658 529 aa8.25□□□□□ -1.09
SPG11-208ENST00000558155 CAMSAP2Q08AD1 1489 aa8.25□□□□□ -1.09
SPG11-208ENST00000558155 ERVK-7P63135 1459 aa8.24□□□□□ -1.09
SPG11-208ENST00000558155 NCOA2Q15596 1464 aa8.24□□□□□ -1.09
SPG11-208ENST00000558155 ABCC3O15438 1527 aa8.24□□□□□ -1.09
SPG11-208ENST00000558155 ARHGEF5Q12774 1597 aa8.23□□□□□ -1.09
SPG11-208ENST00000558155 ZC3H13Q5T200 1668 aaKnown RBP8.22□□□□□ -1.09
SPG11-208ENST00000558155 ARHGAP23Q9P227 1491 aa8.22□□□□□ -1.09
SPG11-208ENST00000558155 BCANQ96GW7 911 aa8.22□□□□□ -1.09
SPG11-208ENST00000558155 UBR1Q8IWV7 1749 aa8.22□□□□□ -1.09
SPG11-208ENST00000558155 TMEM94Q12767 1356 aa8.22□□□□□ -1.09
SPG11-208ENST00000558155 TMEM2Q9UHN6 1383 aa8.22□□□□□ -1.09
SPG11-208ENST00000558155 SLIT1O75093 1534 aa8.21□□□□□ -1.1
SPG11-208ENST00000558155 SLC26A8Q96RN1 970 aa8.21□□□□□ -1.1
SPG11-208ENST00000558155 SLAIN2Q9P270 581 aa8.21□□□□□ -1.1
SPG11-208ENST00000558155 XIRP1Q702N8 1843 aaKnown RBP8.21□□□□□ -1.1
SPG11-208ENST00000558155 HDGFP51858 240 aaKnown RBP8.2□□□□□ -1.1
SPG11-208ENST00000558155 IDI1Q13907 227 aa8.2□□□□□ -1.1
SPG11-208ENST00000558155 ZNF772Q68DY9 489 aaPredicted RBP8.2□□□□□ -1.1
SPG11-208ENST00000558155 SP7Q8TDD2 431 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms