RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PPP6R1Q9UPN7 881 aa20.7■□□□□ 0.9
SHMT2-228ENST00000557302 ERBINQ96RT1 1412 aa20.69■□□□□ 0.9
SHMT2-228ENST00000557302 EIF2AK4Q9P2K8 1649 aaKnown RBP20.68■□□□□ 0.9
SHMT2-228ENST00000557302 PLPPR3Q6T4P5 718 aa20.68■□□□□ 0.9
SHMT2-228ENST00000557302 ROCK1Q13464 1354 aa20.67■□□□□ 0.9
SHMT2-228ENST00000557302 RNF17Q9BXT8 1623 aaKnown RBP20.64■□□□□ 0.89
SHMT2-228ENST00000557302 CEBPAP49715 358 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-228ENST00000557302 FAM135AQ9P2D6 1515 aa20.63■□□□□ 0.89
SHMT2-228ENST00000557302 ANKRD50Q9ULJ7 1429 aa20.61■□□□□ 0.89
SHMT2-228ENST00000557302 WASHC2CQ9Y4E1 1318 aa20.61■□□□□ 0.89
SHMT2-228ENST00000557302 KDM5DQ9BY66 1539 aa20.61■□□□□ 0.89
SHMT2-228ENST00000557302 CLTCQ00610 1675 aaKnown RBP20.61■□□□□ 0.89
SHMT2-228ENST00000557302 ZMYM3Q14202 1370 aa20.6■□□□□ 0.89
SHMT2-228ENST00000557302 MROH2AA6NES4 1674 aa20.6■□□□□ 0.89
SHMT2-228ENST00000557302 C3P01024 1663 aa20.58■□□□□ 0.88
SHMT2-228ENST00000557302 MROH1Q8NDA8 1641 aa20.57■□□□□ 0.88
SHMT2-228ENST00000557302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.56■□□□□ 0.88
SHMT2-228ENST00000557302 PRDM15P57071 1507 aaPredicted RBP20.56■□□□□ 0.88
SHMT2-228ENST00000557302 ABCC3O15438 1527 aa20.55■□□□□ 0.88
SHMT2-228ENST00000557302 KANK1Q14678 1352 aa20.55■□□□□ 0.88
SHMT2-228ENST00000557302 DEPDC5O75140 1603 aa20.54■□□□□ 0.88
SHMT2-228ENST00000557302 ZC3H13Q5T200 1668 aaKnown RBP20.53■□□□□ 0.88
SHMT2-228ENST00000557302 NPATQ14207 1427 aa20.53■□□□□ 0.88
SHMT2-228ENST00000557302 PZPP20742 1482 aa20.5■□□□□ 0.87
SHMT2-228ENST00000557302 NAIPQ13075 1403 aa20.48■□□□□ 0.87
SHMT2-228ENST00000557302 UHRF1BP1Q6BDS2 1440 aa20.48■□□□□ 0.87
SHMT2-228ENST00000557302 LMTK3Q96Q04 1460 aa20.48■□□□□ 0.87
SHMT2-228ENST00000557302 CEP152O94986 1710 aa20.47■□□□□ 0.87
SHMT2-228ENST00000557302 VWDEQ8N2E2 1590 aa20.47■□□□□ 0.87
SHMT2-228ENST00000557302 HFM1A2PYH4 1435 aa20.47■□□□□ 0.87
SHMT2-228ENST00000557302 SETD1BQ9UPS6 1966 aaKnown RBP20.47■□□□□ 0.87
SHMT2-228ENST00000557302 PREX1Q8TCU6 1659 aa20.46■□□□□ 0.87
SHMT2-228ENST00000557302 LMTK2Q8IWU2 1503 aa20.46■□□□□ 0.87
SHMT2-228ENST00000557302 UNC13BO14795 1591 aa20.46■□□□□ 0.87
SHMT2-228ENST00000557302 CAMSAP1Q5T5Y3 1602 aa20.45■□□□□ 0.87
SHMT2-228ENST00000557302 FBXO31Q5XUX0 539 aaPredicted RBP20.45■□□□□ 0.86
SHMT2-228ENST00000557302 GCC2Q8IWJ2 1684 aa20.44■□□□□ 0.86
SHMT2-228ENST00000557302 ARHGAP31Q2M1Z3 1444 aa20.44■□□□□ 0.86
SHMT2-228ENST00000557302 TNRQ92752 1358 aa20.43■□□□□ 0.86
SHMT2-228ENST00000557302 ILDR1Q86SU0 546 aaPredicted RBP20.41■□□□□ 0.86
SHMT2-228ENST00000557302 NUP155O75694 1391 aa20.41■□□□□ 0.86
SHMT2-228ENST00000557302 HSPA2P54652 639 aa20.4■□□□□ 0.86
SHMT2-228ENST00000557302 ERVK-7P63135 1459 aa20.4■□□□□ 0.86
SHMT2-228ENST00000557302 EFCAB6Q5THR3 1501 aa20.39■□□□□ 0.85
SHMT2-228ENST00000557302 MYO3AQ8NEV4 1616 aa20.38■□□□□ 0.85
SHMT2-228ENST00000557302 SPATA31D1Q6ZQQ2 1576 aa20.38■□□□□ 0.85
SHMT2-228ENST00000557302 IQGAP3Q86VI3 1631 aa20.37■□□□□ 0.85
SHMT2-228ENST00000557302 TET3O43151 1660 aa20.36■□□□□ 0.85
SHMT2-228ENST00000557302 CEP170BQ9Y4F5 1589 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-228ENST00000557302 A2ML1A8K2U0 1454 aa20.34■□□□□ 0.85
SHMT2-228ENST00000557302 RPRD2Q5VT52 1461 aaKnown RBP20.34■□□□□ 0.85
SHMT2-228ENST00000557302 NLRP1Q9C000 1473 aa20.34■□□□□ 0.85
SHMT2-228ENST00000557302 TRIM52Q96A61 297 aa20.33■□□□□ 0.85
SHMT2-228ENST00000557302 ZNF142P52746 1687 aaPredicted RBP20.32■□□□□ 0.84
SHMT2-228ENST00000557302 SETD5Q9C0A6 1442 aa20.31■□□□□ 0.84
SHMT2-228ENST00000557302 CFAP65Q6ZU64 1925 aaKnown RBP20.31■□□□□ 0.84
SHMT2-228ENST00000557302 NOS1P29475 1434 aa20.3■□□□□ 0.84
SHMT2-228ENST00000557302 ACIN1Q9UKV3 1341 aaKnown RBP20.27■□□□□ 0.83
SHMT2-228ENST00000557302 E9PCH4 1651 aa20.26■□□□□ 0.83
SHMT2-228ENST00000557302 SYNMO15061 1565 aa20.25■□□□□ 0.83
SHMT2-228ENST00000557302 UGGT1Q9NYU2 1555 aa20.25■□□□□ 0.83
SHMT2-228ENST00000557302 RAB3GAP2Q9H2M9 1393 aa20.24■□□□□ 0.83
SHMT2-228ENST00000557302 THEMISQ8N1K5 641 aaPredicted RBP20.24■□□□□ 0.83
SHMT2-228ENST00000557302 SLC4A1APQ9BWU0 796 aaKnown RBP20.24■□□□□ 0.83
SHMT2-228ENST00000557302 SLC52A1Q9NWF4 448 aa20.24■□□□□ 0.83
SHMT2-228ENST00000557302 PLA2R1Q13018 1463 aa20.24■□□□□ 0.83
SHMT2-228ENST00000557302 IDI1Q13907 227 aa20.22■□□□□ 0.83
SHMT2-228ENST00000557302 PKD2Q13563 968 aa20.21■□□□□ 0.83
SHMT2-228ENST00000557302 STAG3Q9UJ98 1225 aa20.21■□□□□ 0.83
SHMT2-228ENST00000557302 FOXD1Q16676 465 aa20.2■□□□□ 0.82
SHMT2-228ENST00000557302 FBXO41Q8TF61 875 aa20.19■□□□□ 0.82
SHMT2-228ENST00000557302 DMRT2Q9Y5R5 561 aa20.19■□□□□ 0.82
SHMT2-228ENST00000557302 PIK3C2BO00750 1634 aa20.19■□□□□ 0.82
SHMT2-228ENST00000557302 STRCQ7RTU9 1775 aa20.18■□□□□ 0.82
SHMT2-228ENST00000557302 NCKAP5LQ9HCH0 1330 aa20.18■□□□□ 0.82
SHMT2-228ENST00000557302 PTPRTO14522 1441 aa20.18■□□□□ 0.82
SHMT2-228ENST00000557302 UBR1Q8IWV7 1749 aa20.17■□□□□ 0.82
SHMT2-228ENST00000557302 MPHOSPH9Q99550 1183 aa20.17■□□□□ 0.82
SHMT2-228ENST00000557302 HRCP23327 699 aa20.16■□□□□ 0.82
SHMT2-228ENST00000557302 ANKLE2Q86XL3 938 aa20.16■□□□□ 0.82
SHMT2-228ENST00000557302 ADGRB3O60242 1522 aa20.16■□□□□ 0.82
SHMT2-228ENST00000557302 SPHKAPQ2M3C7 1700 aa20.14■□□□□ 0.81
SHMT2-228ENST00000557302 TRIM26Q12899 539 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-228ENST00000557302 KDM5AP29375 1690 aaKnown RBP20.13■□□□□ 0.81
SHMT2-228ENST00000557302 TRPM2O94759 1503 aa20.12■□□□□ 0.81
SHMT2-228ENST00000557302 TMEM2Q9UHN6 1383 aa20.12■□□□□ 0.81
SHMT2-228ENST00000557302 CHGAP10645 457 aaKnown RBP20.12■□□□□ 0.81
SHMT2-228ENST00000557302 SLIT1O75093 1534 aa20.12■□□□□ 0.81
SHMT2-228ENST00000557302 ARHGAP23Q9P227 1491 aa20.11■□□□□ 0.81
SHMT2-228ENST00000557302 EID1Q9Y6B2 187 aa20.09■□□□□ 0.81
SHMT2-228ENST00000557302 POLR1AO95602 1720 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-228ENST00000557302 SCAF11Q99590 1463 aaKnown RBP20.08■□□□□ 0.81
SHMT2-228ENST00000557302 TXNDC2Q86VQ3 553 aa20.08■□□□□ 0.81
SHMT2-228ENST00000557302 TMEM131LA2VDJ0 1609 aa20.08■□□□□ 0.8
SHMT2-228ENST00000557302 NEURL4Q96JN8 1562 aa20.08■□□□□ 0.8
SHMT2-228ENST00000557302 NPHP4O75161 1426 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-228ENST00000557302 MED14O60244 1454 aa20.06■□□□□ 0.8
SHMT2-228ENST00000557302 LTKP29376 864 aa20.06■□□□□ 0.8
SHMT2-228ENST00000557302 CLTCL1P53675 1640 aa20.05■□□□□ 0.8
SHMT2-228ENST00000557302 RIMS2Q9UQ26 1411 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms