RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAM43AQ8N2R8 423 aa16.71■□□□□ 0.27
SFSWAP-209ENST00000540469 ROCK1Q13464 1354 aa16.7■□□□□ 0.26
SFSWAP-209ENST00000540469 PLEKHG5O94827 1062 aa16.69■□□□□ 0.26
SFSWAP-209ENST00000540469 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.69■□□□□ 0.26
SFSWAP-209ENST00000540469 CFDP1Q9UEE9 299 aaPredicted RBP16.69■□□□□ 0.26
SFSWAP-209ENST00000540469 EPRSP07814 1512 aaKnown RBP16.69■□□□□ 0.26
SFSWAP-209ENST00000540469 ABCC5O15440 1437 aa16.68■□□□□ 0.26
SFSWAP-209ENST00000540469 ARHGEF11O15085 1522 aa16.68■□□□□ 0.26
SFSWAP-209ENST00000540469 SAMD9Q5K651 1589 aa16.68■□□□□ 0.26
SFSWAP-209ENST00000540469 SLKQ9H2G2 1235 aaPredicted RBP16.67■□□□□ 0.26
SFSWAP-209ENST00000540469 KIAA1107Q9UPP5 1409 aa16.67■□□□□ 0.26
SFSWAP-209ENST00000540469 WDR43Q15061 677 aaKnown RBP eCLIP16.65■□□□□ 0.26
SFSWAP-209ENST00000540469 GLIPR1L2Q4G1C9 344 aa16.65■□□□□ 0.26
SFSWAP-209ENST00000540469 C8orf34Q49A92 452 aa16.63■□□□□ 0.25
SFSWAP-209ENST00000540469 BECN1Q14457 450 aa16.63■□□□□ 0.25
SFSWAP-209ENST00000540469 RGL3Q3MIN7 710 aa16.63■□□□□ 0.25
SFSWAP-209ENST00000540469 NUP155O75694 1391 aa16.63■□□□□ 0.25
SFSWAP-209ENST00000540469 POGKQ9P215 609 aa16.63■□□□□ 0.25
SFSWAP-209ENST00000540469 NAP1L5Q96NT1 182 aaPredicted RBP16.62■□□□□ 0.25
SFSWAP-209ENST00000540469 KDM5CP41229 1560 aa16.62■□□□□ 0.25
SFSWAP-209ENST00000540469 ZMYND15Q9H091 742 aa16.61■□□□□ 0.25
SFSWAP-209ENST00000540469 PZPP20742 1482 aa16.61■□□□□ 0.25
SFSWAP-209ENST00000540469 KIF14Q15058 1648 aa16.6■□□□□ 0.25
SFSWAP-209ENST00000540469 L1TD1Q5T7N2 865 aaKnown RBP16.6■□□□□ 0.25
SFSWAP-209ENST00000540469 CANXP27824 592 aaKnown RBP16.59■□□□□ 0.25
SFSWAP-209ENST00000540469 KDM2BQ8NHM5 1336 aa16.59■□□□□ 0.25
SFSWAP-209ENST00000540469 PANK3Q9H999 370 aa16.58■□□□□ 0.25
SFSWAP-209ENST00000540469 RALGAPBQ86X10 1494 aa16.58■□□□□ 0.24
SFSWAP-209ENST00000540469 MBD5Q9P267 1494 aa16.58■□□□□ 0.24
SFSWAP-209ENST00000540469 ADAMTS8Q9UP79 889 aa16.58■□□□□ 0.24
SFSWAP-209ENST00000540469 PARD3Q8TEW0 1356 aa16.58■□□□□ 0.24
SFSWAP-209ENST00000540469 ANKRD30AQ9BXX3 1397 aa16.57■□□□□ 0.24
SFSWAP-209ENST00000540469 GOLGA2Q08379 1002 aa16.56■□□□□ 0.24
SFSWAP-209ENST00000540469 UPF2Q9HAU5 1272 aaKnown RBP16.56■□□□□ 0.24
SFSWAP-209ENST00000540469 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
SFSWAP-209ENST00000540469 GZF1Q9H116 711 aaPredicted RBP16.55■□□□□ 0.24
SFSWAP-209ENST00000540469 DNMT1P26358 1616 aaKnown RBP16.55■□□□□ 0.24
SFSWAP-209ENST00000540469 WDR62O43379 1518 aa16.54■□□□□ 0.24
SFSWAP-209ENST00000540469 PNNQ9H307 717 aaKnown RBP16.54■□□□□ 0.24
SFSWAP-209ENST00000540469 SPRYD3Q8NCJ5 442 aa16.54■□□□□ 0.24
SFSWAP-209ENST00000540469 ANKRD50Q9ULJ7 1429 aa16.53■□□□□ 0.24
SFSWAP-209ENST00000540469 RRAGDQ9NQL2 400 aaPredicted RBP16.53■□□□□ 0.24
SFSWAP-209ENST00000540469 TSPY4P0CV99 314 aa16.52■□□□□ 0.24
SFSWAP-209ENST00000540469 TSPY10P0CW01 314 aa16.52■□□□□ 0.24
SFSWAP-209ENST00000540469 NBPF1Q3BBV0 1214 aa16.52■□□□□ 0.23
SFSWAP-209ENST00000540469 TARBP1Q13395 1621 aaKnown RBP16.51■□□□□ 0.23
SFSWAP-209ENST00000540469 KNSTRNQ9Y448 316 aa16.51■□□□□ 0.23
SFSWAP-209ENST00000540469 DUSP27Q5VZP5 1158 aa16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 PER1O15534 1290 aaPredicted RBP16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 CCDC146Q8IYE0 955 aa16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 UHRF1BP1Q6BDS2 1440 aa16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 GOLGA6L3A6NEY3 463 aa16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 TMF1P82094 1093 aa16.5■□□□□ 0.23
SFSWAP-209ENST00000540469 PODXL2Q9NZ53 605 aa16.49■□□□□ 0.23
SFSWAP-209ENST00000540469 CAMSAP2Q08AD1 1489 aa16.48■□□□□ 0.23
SFSWAP-209ENST00000540469 HSP90AA1P07900 732 aaKnown RBP16.47■□□□□ 0.23
SFSWAP-209ENST00000540469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.47■□□□□ 0.236e-8■■■□□ 18.3
SFSWAP-209ENST00000540469 PLEKHH2Q8IVE3 1493 aa16.47■□□□□ 0.23
SFSWAP-209ENST00000540469 BLMP54132 1417 aaPredicted RBP16.47■□□□□ 0.23
SFSWAP-209ENST00000540469 BCAR3O75815 825 aa16.46■□□□□ 0.23
SFSWAP-209ENST00000540469 HSP90AA2PQ14568 343 aaPredicted RBP16.46■□□□□ 0.23
SFSWAP-209ENST00000540469 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
SFSWAP-209ENST00000540469 PRG4Q92954 1404 aaPredicted RBP16.45■□□□□ 0.22
SFSWAP-209ENST00000540469 SEC24BO95487 1268 aa16.45■□□□□ 0.22
SFSWAP-209ENST00000540469 PLEKHH1Q9ULM0 1364 aa16.45■□□□□ 0.22
SFSWAP-209ENST00000540469 KIAA0586Q9BVV6 1533 aa16.44■□□□□ 0.22
SFSWAP-209ENST00000540469 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-209ENST00000540469 ZMYM4Q5VZL5 1548 aa16.44■□□□□ 0.22
SFSWAP-209ENST00000540469 MAPK8IP3Q9UPT6 1336 aa16.44■□□□□ 0.22
SFSWAP-209ENST00000540469 COG6Q9Y2V7 657 aa16.43■□□□□ 0.22
SFSWAP-209ENST00000540469 IGHDP01880 384 aa16.43■□□□□ 0.22
SFSWAP-209ENST00000540469 DISP3Q9P2K9 1392 aa16.43■□□□□ 0.22
SFSWAP-209ENST00000540469 JPH4Q96JJ6 628 aa16.42■□□□□ 0.22
SFSWAP-209ENST00000540469 A0A0U1RQG5 324 aaPredicted RBP16.42■□□□□ 0.22
SFSWAP-209ENST00000540469 APAF1O14727 1248 aa16.42■□□□□ 0.22
SFSWAP-209ENST00000540469 ARHGEF12Q9NZN5 1544 aa16.41■□□□□ 0.22
SFSWAP-209ENST00000540469 PPP2R1AP30153 589 aa16.41■□□□□ 0.22
SFSWAP-209ENST00000540469 SLFN5Q08AF3 891 aa16.41■□□□□ 0.22
SFSWAP-209ENST00000540469 CCDC144AA2RUR9 1427 aa16.4■□□□□ 0.22
SFSWAP-209ENST00000540469 PANK2Q9BZ23 570 aa16.4■□□□□ 0.22
SFSWAP-209ENST00000540469 XRCC6P12956 609 aaKnown RBP eCLIP16.4■□□□□ 0.22
SFSWAP-209ENST00000540469 PANK1Q8TE04 598 aa16.4■□□□□ 0.22
SFSWAP-209ENST00000540469 CGNL1Q0VF96 1302 aa16.39■□□□□ 0.21
SFSWAP-209ENST00000540469 CLUAP1Q96AJ1 413 aa16.39■□□□□ 0.21
SFSWAP-209ENST00000540469 TRIM44Q96DX7 344 aaPredicted RBP16.38■□□□□ 0.21
SFSWAP-209ENST00000540469 EIF3AQ14152 1382 aaKnown RBP16.38■□□□□ 0.21
SFSWAP-209ENST00000540469 TROQ12816 1431 aaPredicted RBP16.38■□□□□ 0.21
SFSWAP-209ENST00000540469 NEUROD2Q15784 382 aa16.37■□□□□ 0.21
SFSWAP-209ENST00000540469 USP19O94966 1318 aa16.37■□□□□ 0.21
SFSWAP-209ENST00000540469 HNRNPMP52272 730 aaKnown RBP eCLIP16.37■□□□□ 0.21
SFSWAP-209ENST00000540469 ERBINQ96RT1 1412 aa16.37■□□□□ 0.21
SFSWAP-209ENST00000540469 CENPJQ9HC77 1338 aaPredicted RBP16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 NUP153P49790 1475 aaKnown RBP16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 PLEKHD1A6NEE1 506 aa16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 TBC1D2Q9BYX2 928 aa16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 MYH16Q9H6N6 1097 aa16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 TESK2Q96S53 571 aa16.36■□□□□ 0.21
SFSWAP-209ENST00000540469 INSRP06213 1382 aa16.35■□□□□ 0.21
SFSWAP-209ENST00000540469 C9orf84Q5VXU9 1444 aa16.35■□□□□ 0.21
SFSWAP-209ENST00000540469 E9PSI1 815 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms