RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 ERBINQ96RT1 1412 aa34.72■■■■□ 3.15
SFSWAP-204ENST00000535399 ITGAEP38570 1179 aa34.69■■■■□ 3.14
SFSWAP-204ENST00000535399 EIF2AK4Q9P2K8 1649 aaKnown RBP34.69■■■■□ 3.14
SFSWAP-204ENST00000535399 ROCK1Q13464 1354 aa34.67■■■■□ 3.14
SFSWAP-204ENST00000535399 ZMYM3Q14202 1370 aa34.67■■■■□ 3.14
SFSWAP-204ENST00000535399 RNF17Q9BXT8 1623 aaKnown RBP34.66■■■■□ 3.14
SFSWAP-204ENST00000535399 FAM135AQ9P2D6 1515 aa34.62■■■■□ 3.13
SFSWAP-204ENST00000535399 MROH2AA6NES4 1674 aa34.61■■■■□ 3.13
SFSWAP-204ENST00000535399 CLTCQ00610 1675 aaKnown RBP34.61■■■■□ 3.13
SFSWAP-204ENST00000535399 C3P01024 1663 aa34.6■■■■□ 3.13
SFSWAP-204ENST00000535399 WASHC2CQ9Y4E1 1318 aa34.6■■■■□ 3.13
SFSWAP-204ENST00000535399 MROH1Q8NDA8 1641 aa34.6■■■■□ 3.13
SFSWAP-204ENST00000535399 KDM5DQ9BY66 1539 aa34.6■■■■□ 3.13
SFSWAP-204ENST00000535399 ANKRD50Q9ULJ7 1429 aa34.58■■■■□ 3.13
SFSWAP-204ENST00000535399 ABCC3O15438 1527 aa34.53■■■■□ 3.12
SFSWAP-204ENST00000535399 PRDM15P57071 1507 aaPredicted RBP34.52■■■■□ 3.12
SFSWAP-204ENST00000535399 LMTK3Q96Q04 1460 aa34.52■■■■□ 3.12
SFSWAP-204ENST00000535399 NPATQ14207 1427 aa34.51■■■■□ 3.12
SFSWAP-204ENST00000535399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.5■■■■□ 3.119e-7■■■□□ 14.7
SFSWAP-204ENST00000535399 DEPDC5O75140 1603 aa34.49■■■■□ 3.11
SFSWAP-204ENST00000535399 PZPP20742 1482 aa34.46■■■■□ 3.11
SFSWAP-204ENST00000535399 ZC3H13Q5T200 1668 aaKnown RBP34.44■■■■□ 3.1
SFSWAP-204ENST00000535399 KANK1Q14678 1352 aa34.43■■■■□ 3.1
SFSWAP-204ENST00000535399 FBXO31Q5XUX0 539 aaPredicted RBP34.42■■■■□ 3.1
SFSWAP-204ENST00000535399 VWDEQ8N2E2 1590 aa34.41■■■■□ 3.1
SFSWAP-204ENST00000535399 UHRF1BP1Q6BDS2 1440 aa34.41■■■■□ 3.1
SFSWAP-204ENST00000535399 SETD1BQ9UPS6 1966 aaKnown RBP34.41■■■■□ 3.1
SFSWAP-204ENST00000535399 PREX1Q8TCU6 1659 aa34.38■■■■□ 3.09
SFSWAP-204ENST00000535399 NAIPQ13075 1403 aa34.38■■■■□ 3.09
SFSWAP-204ENST00000535399 LMTK2Q8IWU2 1503 aa34.36■■■■□ 3.09
SFSWAP-204ENST00000535399 CEP152O94986 1710 aa34.36■■■■□ 3.09
SFSWAP-204ENST00000535399 HSPA2P54652 639 aa34.36■■■■□ 3.09
SFSWAP-204ENST00000535399 ARHGAP31Q2M1Z3 1444 aa34.34■■■■□ 3.09
SFSWAP-204ENST00000535399 HFM1A2PYH4 1435 aa34.33■■■■□ 3.09
SFSWAP-204ENST00000535399 TNRQ92752 1358 aa34.33■■■■□ 3.09
SFSWAP-204ENST00000535399 CAMSAP1Q5T5Y3 1602 aa34.33■■■■□ 3.09
SFSWAP-204ENST00000535399 UNC13BO14795 1591 aa34.32■■■■□ 3.08
SFSWAP-204ENST00000535399 ERVK-7P63135 1459 aa34.28■■■■□ 3.08
SFSWAP-204ENST00000535399 SPATA31D1Q6ZQQ2 1576 aa34.26■■■■□ 3.07
SFSWAP-204ENST00000535399 MYO3AQ8NEV4 1616 aa34.25■■■■□ 3.07
SFSWAP-204ENST00000535399 GCC2Q8IWJ2 1684 aa34.24■■■■□ 3.07
SFSWAP-204ENST00000535399 NUP155O75694 1391 aa34.23■■■■□ 3.07
SFSWAP-204ENST00000535399 EFCAB6Q5THR3 1501 aa34.22■■■■□ 3.07
SFSWAP-204ENST00000535399 A2ML1A8K2U0 1454 aa34.2■■■■□ 3.06
SFSWAP-204ENST00000535399 CEP170BQ9Y4F5 1589 aaPredicted RBP34.19■■■■□ 3.06
SFSWAP-204ENST00000535399 NLRP1Q9C000 1473 aa34.18■■■■□ 3.06
SFSWAP-204ENST00000535399 IQGAP3Q86VI3 1631 aa34.17■■■■□ 3.06
SFSWAP-204ENST00000535399 ZNF142P52746 1687 aaPredicted RBP34.16■■■■□ 3.06
SFSWAP-204ENST00000535399 TET3O43151 1660 aa34.15■■■■□ 3.06
SFSWAP-204ENST00000535399 RPRD2Q5VT52 1461 aaKnown RBP34.14■■■■□ 3.06
SFSWAP-204ENST00000535399 NOS1P29475 1434 aa34.13■■■■□ 3.05
SFSWAP-204ENST00000535399 CFAP65Q6ZU64 1925 aaKnown RBP34.08■■■■□ 3.05
SFSWAP-204ENST00000535399 TRIM52Q96A61 297 aa34.05■■■■□ 3.04
SFSWAP-204ENST00000535399 SYNMO15061 1565 aa34.04■■■■□ 3.04
SFSWAP-204ENST00000535399 SETD5Q9C0A6 1442 aa34.04■■■■□ 3.04
SFSWAP-204ENST00000535399 UGGT1Q9NYU2 1555 aa34.03■■■■□ 3.04
SFSWAP-204ENST00000535399 PLA2R1Q13018 1463 aa34.03■■■■□ 3.04
SFSWAP-204ENST00000535399 E9PCH4 1651 aa34.02■■■■□ 3.04
SFSWAP-204ENST00000535399 STRCQ7RTU9 1775 aa34.01■■■■□ 3.04
SFSWAP-204ENST00000535399 IDI1Q13907 227 aa34.01■■■■□ 3.03
SFSWAP-204ENST00000535399 THEMISQ8N1K5 641 aaPredicted RBP34.01■■■■□ 3.03
SFSWAP-204ENST00000535399 NCKAP5LQ9HCH0 1330 aa33.98■■■■□ 3.03
SFSWAP-204ENST00000535399 SLC52A1Q9NWF4 448 aa33.97■■■■□ 3.03
SFSWAP-204ENST00000535399 PKD2Q13563 968 aa33.95■■■■□ 3.03
SFSWAP-204ENST00000535399 DMRT2Q9Y5R5 561 aa33.94■■■■□ 3.02
SFSWAP-204ENST00000535399 RAB3GAP2Q9H2M9 1393 aa33.93■■■■□ 3.02
SFSWAP-204ENST00000535399 SLC4A1APQ9BWU0 796 aaKnown RBP33.92■■■■□ 3.02
SFSWAP-204ENST00000535399 PIK3C2BO00750 1634 aa33.91■■■■□ 3.02
SFSWAP-204ENST00000535399 PTPRTO14522 1441 aa33.91■■■■□ 3.02
SFSWAP-204ENST00000535399 UBR1Q8IWV7 1749 aa33.9■■■■□ 3.02
SFSWAP-204ENST00000535399 ACIN1Q9UKV3 1341 aaKnown RBP33.88■■■■□ 3.01
SFSWAP-204ENST00000535399 ANKLE2Q86XL3 938 aa33.88■■■■□ 3.01
SFSWAP-204ENST00000535399 STAG3Q9UJ98 1225 aa33.87■■■■□ 3.01
SFSWAP-204ENST00000535399 ARHGAP23Q9P227 1491 aa33.84■■■■□ 3.01
SFSWAP-204ENST00000535399 ADGRB3O60242 1522 aa33.84■■■■□ 3.01
SFSWAP-204ENST00000535399 MPHOSPH9Q99550 1183 aa33.83■■■■□ 3.01
SFSWAP-204ENST00000535399 SLIT1O75093 1534 aa33.82■■■■□ 3
SFSWAP-204ENST00000535399 TMEM2Q9UHN6 1383 aa33.82■■■■□ 3
SFSWAP-204ENST00000535399 KDM5AP29375 1690 aaKnown RBP33.81■■■■□ 3
SFSWAP-204ENST00000535399 HRCP23327 699 aa33.8■■■■□ 3
SFSWAP-204ENST00000535399 NEURL4Q96JN8 1562 aa33.8■■■■□ 3
SFSWAP-204ENST00000535399 LTKP29376 864 aa33.78■■■■□ 3
SFSWAP-204ENST00000535399 SPHKAPQ2M3C7 1700 aa33.78■■■■□ 3
SFSWAP-204ENST00000535399 MED14O60244 1454 aa33.76■■■■□ 3
SFSWAP-204ENST00000535399 TRPM2O94759 1503 aa33.76■■■■□ 3
SFSWAP-204ENST00000535399 FOXD1Q16676 465 aa33.76■■■□□ 2.99
SFSWAP-204ENST00000535399 TXNDC2Q86VQ3 553 aa33.76■■■□□ 2.99
SFSWAP-204ENST00000535399 SCAF11Q99590 1463 aaKnown RBP33.76■■■□□ 2.99
SFSWAP-204ENST00000535399 CHGAP10645 457 aaKnown RBP33.74■■■□□ 2.99
SFSWAP-204ENST00000535399 TMEM131LA2VDJ0 1609 aa33.74■■■□□ 2.99
SFSWAP-204ENST00000535399 POLR1AO95602 1720 aaPredicted RBP33.73■■■□□ 2.99
SFSWAP-204ENST00000535399 NPHP4O75161 1426 aaPredicted RBP33.73■■■□□ 2.99
SFSWAP-204ENST00000535399 EID1Q9Y6B2 187 aa33.72■■■□□ 2.99
SFSWAP-204ENST00000535399 ZFYVE9O95405 1425 aa33.68■■■□□ 2.98
SFSWAP-204ENST00000535399 CLTCL1P53675 1640 aa33.68■■■□□ 2.98
SFSWAP-204ENST00000535399 RIMS2Q9UQ26 1411 aa33.65■■■□□ 2.98
SFSWAP-204ENST00000535399 TRIM26Q12899 539 aaPredicted RBP33.64■■■□□ 2.98
SFSWAP-204ENST00000535399 ZNF335Q9H4Z2 1342 aaPredicted RBP33.61■■■□□ 2.97
SFSWAP-204ENST00000535399 MYO5BQ9ULV0 1848 aa33.61■■■□□ 2.97
SFSWAP-204ENST00000535399 IQGAP1P46940 1657 aa33.61■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms