RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 RNF17Q9BXT8 1623 aaKnown RBP20.99■□□□□ 0.95
TRIM3-212ENST00000533064 IQGAP3Q86VI3 1631 aa20.96■□□□□ 0.95
TRIM3-212ENST00000533064 KDM5DQ9BY66 1539 aa20.96■□□□□ 0.95
TRIM3-212ENST00000533064 NUP155O75694 1391 aa20.96■□□□□ 0.95
TRIM3-212ENST00000533064 CCER1Q8TC90 406 aaPredicted RBP20.96■□□□□ 0.95
TRIM3-212ENST00000533064 AGLP35573 1532 aa20.95■□□□□ 0.94
TRIM3-212ENST00000533064 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.95■□□□□ 0.94
TRIM3-212ENST00000533064 PRDM15P57071 1507 aaPredicted RBP20.94■□□□□ 0.94
TRIM3-212ENST00000533064 KANK1Q14678 1352 aa20.94■□□□□ 0.94
TRIM3-212ENST00000533064 SIGLEC1Q9BZZ2 1709 aa20.94■□□□□ 0.94
TRIM3-212ENST00000533064 DHX57Q6P158 1386 aaKnown RBP20.94■□□□□ 0.94
TRIM3-212ENST00000533064 CEP152O94986 1710 aa20.93■□□□□ 0.94
TRIM3-212ENST00000533064 MROH1Q8NDA8 1641 aa20.92■□□□□ 0.94
TRIM3-212ENST00000533064 FAM135AQ9P2D6 1515 aa20.92■□□□□ 0.94
TRIM3-212ENST00000533064 SLC4A1APQ9BWU0 796 aaKnown RBP20.9■□□□□ 0.94
TRIM3-212ENST00000533064 ZC3H13Q5T200 1668 aaKnown RBP20.9■□□□□ 0.94
TRIM3-212ENST00000533064 PZPP20742 1482 aa20.9■□□□□ 0.94
TRIM3-212ENST00000533064 GGT6Q6P531 493 aa20.89■□□□□ 0.94
TRIM3-212ENST00000533064 MPHOSPH9Q99550 1183 aa20.89■□□□□ 0.93
TRIM3-212ENST00000533064 CFAP65Q6ZU64 1925 aaKnown RBP20.88■□□□□ 0.93
TRIM3-212ENST00000533064 TET3O43151 1660 aa20.88■□□□□ 0.93
TRIM3-212ENST00000533064 ZEB1P37275 1124 aaPredicted RBP20.88■□□□□ 0.93
TRIM3-212ENST00000533064 VWDEQ8N2E2 1590 aa20.88■□□□□ 0.93
TRIM3-212ENST00000533064 ARID4BQ4LE39 1312 aaPredicted RBP20.88■□□□□ 0.93
TRIM3-212ENST00000533064 CLSPNQ9HAW4 1339 aa20.83■□□□□ 0.93
TRIM3-212ENST00000533064 E9PCH4 1651 aa20.82■□□□□ 0.92
TRIM3-212ENST00000533064 CAMSAP1Q5T5Y3 1602 aa20.82■□□□□ 0.92
TRIM3-212ENST00000533064 WASHC2CQ9Y4E1 1318 aa20.82■□□□□ 0.92
TRIM3-212ENST00000533064 CLTCQ00610 1675 aaKnown RBP20.81■□□□□ 0.92
TRIM3-212ENST00000533064 PKD2Q13563 968 aa20.81■□□□□ 0.92
TRIM3-212ENST00000533064 PPP6R1Q9UPN7 881 aa20.81■□□□□ 0.92
TRIM3-212ENST00000533064 LMTK2Q8IWU2 1503 aa20.81■□□□□ 0.92
TRIM3-212ENST00000533064 ABCC3O15438 1527 aa20.8■□□□□ 0.92
TRIM3-212ENST00000533064 MLECQ14165 292 aa20.8■□□□□ 0.92
TRIM3-212ENST00000533064 FER1L4A9Z1Z3 1794 aa20.79■□□□□ 0.92
TRIM3-212ENST00000533064 EFCAB6Q5THR3 1501 aa20.79■□□□□ 0.92
TRIM3-212ENST00000533064 ESF1Q9H501 851 aaKnown RBP20.78■□□□□ 0.92
TRIM3-212ENST00000533064 SPHKAPQ2M3C7 1700 aa20.78■□□□□ 0.92
TRIM3-212ENST00000533064 FOXD1Q16676 465 aa20.74■□□□□ 0.91
TRIM3-212ENST00000533064 MROH2AA6NES4 1674 aa20.74■□□□□ 0.91
TRIM3-212ENST00000533064 RPRD2Q5VT52 1461 aaKnown RBP20.73■□□□□ 0.91
TRIM3-212ENST00000533064 CNTLNQ9NXG0 1405 aa20.7■□□□□ 0.91
TRIM3-212ENST00000533064 ANKRD30BQ9BXX2 1392 aa20.7■□□□□ 0.9
TRIM3-212ENST00000533064 PREX1Q8TCU6 1659 aa20.69■□□□□ 0.9
TRIM3-212ENST00000533064 ARHGAP31Q2M1Z3 1444 aa20.69■□□□□ 0.9
TRIM3-212ENST00000533064 NPATQ14207 1427 aa20.68■□□□□ 0.9
TRIM3-212ENST00000533064 KIF1BO60333 1816 aa20.67■□□□□ 0.9
TRIM3-212ENST00000533064 ADAMTSL3P82987 1691 aa20.66■□□□□ 0.9
TRIM3-212ENST00000533064 TRPM2O94759 1503 aa20.66■□□□□ 0.9
TRIM3-212ENST00000533064 RIMS1Q86UR5 1692 aaKnown RBP20.66■□□□□ 0.9
TRIM3-212ENST00000533064 MADDQ8WXG6 1647 aa20.65■□□□□ 0.9
TRIM3-212ENST00000533064 NEUROD1Q13562 356 aa20.64■□□□□ 0.9
TRIM3-212ENST00000533064 C3P01024 1663 aa20.64■□□□□ 0.89
TRIM3-212ENST00000533064 CCDC144AA2RUR9 1427 aa20.64■□□□□ 0.89
TRIM3-212ENST00000533064 SIN3AQ96ST3 1273 aa20.64■□□□□ 0.89
TRIM3-212ENST00000533064 PTPRTO14522 1441 aa20.63■□□□□ 0.89
TRIM3-212ENST00000533064 ZMYM3Q14202 1370 aa20.62■□□□□ 0.89
TRIM3-212ENST00000533064 PLA2R1Q13018 1463 aa20.61■□□□□ 0.89
TRIM3-212ENST00000533064 CLTCL1P53675 1640 aa20.6■□□□□ 0.89
TRIM3-212ENST00000533064 NOS1P29475 1434 aa20.58■□□□□ 0.89
TRIM3-212ENST00000533064 SYNMO15061 1565 aa20.58■□□□□ 0.88
TRIM3-212ENST00000533064 ERVK-7P63135 1459 aa20.58■□□□□ 0.88
TRIM3-212ENST00000533064 SPATA31D1Q6ZQQ2 1576 aa20.57■□□□□ 0.88
TRIM3-212ENST00000533064 TONSLQ96HA7 1378 aa20.56■□□□□ 0.88
TRIM3-212ENST00000533064 SETD1BQ9UPS6 1966 aaKnown RBP20.56■□□□□ 0.88
TRIM3-212ENST00000533064 PIK3C2BO00750 1634 aa20.56■□□□□ 0.88
TRIM3-212ENST00000533064 TIMELESSQ9UNS1 1208 aa20.54■□□□□ 0.88
TRIM3-212ENST00000533064 MYO5BQ9ULV0 1848 aa20.54■□□□□ 0.88
TRIM3-212ENST00000533064 UGGT1Q9NYU2 1555 aa20.53■□□□□ 0.88
TRIM3-212ENST00000533064 FBXO31Q5XUX0 539 aaPredicted RBP20.53■□□□□ 0.88
TRIM3-212ENST00000533064 SLC52A1Q9NWF4 448 aa20.51■□□□□ 0.87
TRIM3-212ENST00000533064 NEURL4Q96JN8 1562 aa20.49■□□□□ 0.87
TRIM3-212ENST00000533064 PLPPR3Q6T4P5 718 aa20.48■□□□□ 0.87
TRIM3-212ENST00000533064 TNRQ92752 1358 aa20.48■□□□□ 0.87
TRIM3-212ENST00000533064 CEBPAP49715 358 aaPredicted RBP20.48■□□□□ 0.87
TRIM3-212ENST00000533064 CHGAP10645 457 aaKnown RBP20.45■□□□□ 0.86
TRIM3-212ENST00000533064 ADGRB3O60242 1522 aa20.45■□□□□ 0.86
TRIM3-212ENST00000533064 KDM5AP29375 1690 aaKnown RBP20.45■□□□□ 0.86
TRIM3-212ENST00000533064 TMEM131LA2VDJ0 1609 aa20.44■□□□□ 0.86
TRIM3-212ENST00000533064 PTPRMP28827 1452 aa20.44■□□□□ 0.86
TRIM3-212ENST00000533064 SPATA31E1Q6ZUB1 1445 aa20.44■□□□□ 0.86
TRIM3-212ENST00000533064 IDI1Q13907 227 aa20.44■□□□□ 0.86
TRIM3-212ENST00000533064 RGL3Q3MIN7 710 aa20.44■□□□□ 0.86
TRIM3-212ENST00000533064 IFT172Q9UG01 1749 aa20.43■□□□□ 0.86
TRIM3-212ENST00000533064 L3MBTL2Q969R5 705 aa20.43■□□□□ 0.86
TRIM3-212ENST00000533064 MYO3AQ8NEV4 1616 aa20.43■□□□□ 0.86
TRIM3-212ENST00000533064 NLRP1Q9C000 1473 aa20.42■□□□□ 0.86
TRIM3-212ENST00000533064 STAG3Q9UJ98 1225 aa20.42■□□□□ 0.86
TRIM3-212ENST00000533064 PPLO60437 1756 aa20.42■□□□□ 0.86
TRIM3-212ENST00000533064 UBR1Q8IWV7 1749 aa20.41■□□□□ 0.86
TRIM3-212ENST00000533064 ZNF326Q5BKZ1 582 aaKnown RBP20.4■□□□□ 0.86
TRIM3-212ENST00000533064 DCAF11Q8TEB1 546 aa20.38■□□□□ 0.85
TRIM3-212ENST00000533064 ZNF142P52746 1687 aaPredicted RBP20.37■□□□□ 0.85
TRIM3-212ENST00000533064 PPP1R15AO75807 674 aaPredicted RBP20.37■□□□□ 0.85
TRIM3-212ENST00000533064 KDM2AQ9Y2K7 1162 aa20.35■□□□□ 0.85
TRIM3-212ENST00000533064 STAC3Q96MF2 364 aa20.35■□□□□ 0.85
TRIM3-212ENST00000533064 CEP170BQ9Y4F5 1589 aaPredicted RBP20.34■□□□□ 0.85
TRIM3-212ENST00000533064 RPGRIP1LQ68CZ1 1315 aa20.34■□□□□ 0.85
TRIM3-212ENST00000533064 KDM4FA0A1W2PPD8 638 aa20.34■□□□□ 0.85
TRIM3-212ENST00000533064 A2ML1A8K2U0 1454 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms