RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-208ENST00000529994 MBD5Q9P267 1494 aa18.32■□□□□ 0.52
SF3B2-208ENST00000529994 TNRQ92752 1358 aa18.31■□□□□ 0.52
SF3B2-208ENST00000529994 KIF3BO15066 747 aa18.31■□□□□ 0.52
SF3B2-208ENST00000529994 DHX29Q7Z478 1369 aaKnown RBP18.3■□□□□ 0.52
SF3B2-208ENST00000529994 MED1Q15648 1581 aaPredicted RBP18.3■□□□□ 0.52
SF3B2-208ENST00000529994 SHANK2Q9UPX8 1470 aa18.29■□□□□ 0.52
SF3B2-208ENST00000529994 TOM1O60784 492 aa18.29■□□□□ 0.52
SF3B2-208ENST00000529994 RTEL1-TNFRSF6BF6WH68 1400 aa18.28■□□□□ 0.52
SF3B2-208ENST00000529994 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.28■□□□□ 0.52
SF3B2-208ENST00000529994 CPS1P31327 1500 aa18.28■□□□□ 0.52
SF3B2-208ENST00000529994 EHBP1L1Q8N3D4 1523 aa18.27■□□□□ 0.51
SF3B2-208ENST00000529994 WASHC2CQ9Y4E1 1318 aa18.26■□□□□ 0.51
SF3B2-208ENST00000529994 KDM5DQ9BY66 1539 aa18.26■□□□□ 0.51
SF3B2-208ENST00000529994 PZPP20742 1482 aa18.26■□□□□ 0.51
SF3B2-208ENST00000529994 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
SF3B2-208ENST00000529994 SENP3Q9H4L4 574 aaPredicted RBP18.25■□□□□ 0.51
SF3B2-208ENST00000529994 VWDEQ8N2E2 1590 aa18.24■□□□□ 0.51
SF3B2-208ENST00000529994 CEP162Q5TB80 1403 aa18.23■□□□□ 0.51
SF3B2-208ENST00000529994 CCDC141Q6ZP82 1450 aa18.22■□□□□ 0.51
SF3B2-208ENST00000529994 THEMISQ8N1K5 641 aaPredicted RBP18.22■□□□□ 0.51
SF3B2-208ENST00000529994 UGGT1Q9NYU2 1555 aa18.21■□□□□ 0.51
SF3B2-208ENST00000529994 CAMSAP2Q08AD1 1489 aa18.21■□□□□ 0.51
SF3B2-208ENST00000529994 MIA2Q96PC5 1412 aa18.21■□□□□ 0.51
SF3B2-208ENST00000529994 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
SF3B2-208ENST00000529994 NPHP4O75161 1426 aaPredicted RBP18.2■□□□□ 0.5
SF3B2-208ENST00000529994 ALKQ9UM73 1620 aa18.2■□□□□ 0.5
SF3B2-208ENST00000529994 NLRP1Q9C000 1473 aa18.19■□□□□ 0.5
SF3B2-208ENST00000529994 FAM135AQ9P2D6 1515 aa18.18■□□□□ 0.5
SF3B2-208ENST00000529994 NCOA2Q15596 1464 aa18.18■□□□□ 0.5
SF3B2-208ENST00000529994 IQGAP1P46940 1657 aa18.18■□□□□ 0.5
SF3B2-208ENST00000529994 STRCP1A6NGW2 1772 aa18.17■□□□□ 0.5
SF3B2-208ENST00000529994 DEPDC5O75140 1603 aa18.17■□□□□ 0.5
SF3B2-208ENST00000529994 CFAP65Q6ZU64 1925 aaKnown RBP18.16■□□□□ 0.5
SF3B2-208ENST00000529994 MED14O60244 1454 aa18.16■□□□□ 0.5
SF3B2-208ENST00000529994 RSPH4AQ5TD94 716 aa18.15■□□□□ 0.5
SF3B2-208ENST00000529994 TSPY4P0CV99 314 aa18.13■□□□□ 0.49
SF3B2-208ENST00000529994 TSPY10P0CW01 314 aa18.13■□□□□ 0.49
SF3B2-208ENST00000529994 LRRC7Q96NW7 1537 aa18.12■□□□□ 0.49
SF3B2-208ENST00000529994 ARHGEF5Q12774 1597 aa18.12■□□□□ 0.49
SF3B2-208ENST00000529994 ABCC3O15438 1527 aa18.11■□□□□ 0.49
SF3B2-208ENST00000529994 RNF17Q9BXT8 1623 aaKnown RBP18.1■□□□□ 0.49
SF3B2-208ENST00000529994 CEP152O94986 1710 aa18.08■□□□□ 0.48
SF3B2-208ENST00000529994 ZC3H13Q5T200 1668 aaKnown RBP18.08■□□□□ 0.48
SF3B2-208ENST00000529994 ERVK-7P63135 1459 aa18.07■□□□□ 0.48
SF3B2-208ENST00000529994 SYNMO15061 1565 aa18.07■□□□□ 0.48
SF3B2-208ENST00000529994 UBR1Q8IWV7 1749 aa18.06■□□□□ 0.48
SF3B2-208ENST00000529994 MROH1Q8NDA8 1641 aa18.04■□□□□ 0.48
SF3B2-208ENST00000529994 LTKP29376 864 aa18.03■□□□□ 0.48
SF3B2-208ENST00000529994 MAST1Q9Y2H9 1570 aa18.03■□□□□ 0.48
SF3B2-208ENST00000529994 XIRP1Q702N8 1843 aaKnown RBP18.02■□□□□ 0.48
SF3B2-208ENST00000529994 SCAF11Q99590 1463 aaKnown RBP18.02■□□□□ 0.48
SF3B2-208ENST00000529994 EIF2AK4Q9P2K8 1649 aaKnown RBP18.02■□□□□ 0.48
SF3B2-208ENST00000529994 TXNDC2Q86VQ3 553 aa18.01■□□□□ 0.47
SF3B2-208ENST00000529994 RGS17Q9UGC6 210 aaPredicted RBP18.01■□□□□ 0.47
SF3B2-208ENST00000529994 LRRC9Q6ZRR7 1453 aa18■□□□□ 0.47
SF3B2-208ENST00000529994 ARHGAP23Q9P227 1491 aa17.96■□□□□ 0.47
SF3B2-208ENST00000529994 KANK4Q5T7N3 995 aaPredicted RBP17.96■□□□□ 0.47
SF3B2-208ENST00000529994 SLIT1O75093 1534 aa17.96■□□□□ 0.47
SF3B2-208ENST00000529994 DUOX2Q9NRD8 1548 aa17.95■□□□□ 0.46
SF3B2-208ENST00000529994 EID1Q9Y6B2 187 aa17.95■□□□□ 0.46
SF3B2-208ENST00000529994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.94■□□□□ 0.462e-15■■■□□ 17.6
SF3B2-208ENST00000529994 PIK3C2BO00750 1634 aa17.94■□□□□ 0.46
SF3B2-208ENST00000529994 MYOM3Q5VTT5 1437 aa17.92■□□□□ 0.46
SF3B2-208ENST00000529994 RBM33Q96EV2 1170 aaKnown RBP17.92■□□□□ 0.46
SF3B2-208ENST00000529994 RRP7BPQ9NSQ0 103 aa17.92■□□□□ 0.46
SF3B2-208ENST00000529994 STAG3Q9UJ98 1225 aa17.92■□□□□ 0.46
SF3B2-208ENST00000529994 KIF15Q9NS87 1388 aa17.91■□□□□ 0.46
SF3B2-208ENST00000529994 VPS8Q8N3P4 1428 aa17.91■□□□□ 0.46
SF3B2-208ENST00000529994 PRDM15P57071 1507 aaPredicted RBP17.91■□□□□ 0.46
SF3B2-208ENST00000529994 ARHGAP31Q2M1Z3 1444 aa17.9■□□□□ 0.46
SF3B2-208ENST00000529994 POTEAQ6S8J7 498 aa17.9■□□□□ 0.46
SF3B2-208ENST00000529994 TMEM94Q12767 1356 aa17.9■□□□□ 0.46
SF3B2-208ENST00000529994 TMEM2Q9UHN6 1383 aa17.9■□□□□ 0.46
SF3B2-208ENST00000529994 SLC26A8Q96RN1 970 aa17.89■□□□□ 0.45
SF3B2-208ENST00000529994 FAM135BQ49AJ0 1406 aa17.89■□□□□ 0.45
SF3B2-208ENST00000529994 CROCC2H7BZ55 1655 aa17.88■□□□□ 0.45
SF3B2-208ENST00000529994 ROBO1Q9Y6N7 1651 aa17.88■□□□□ 0.45
SF3B2-208ENST00000529994 ERBINQ96RT1 1412 aa17.87■□□□□ 0.45
SF3B2-208ENST00000529994 LOC105371045A0A1W2PR82 267 aa17.86■□□□□ 0.45
SF3B2-208ENST00000529994 IDI1Q13907 227 aa17.86■□□□□ 0.45
SF3B2-208ENST00000529994 PROSER2Q86WR7 435 aaPredicted RBP17.86■□□□□ 0.45
SF3B2-208ENST00000529994 ABCC5O15440 1437 aa17.86■□□□□ 0.45
SF3B2-208ENST00000529994 EFCAB6Q5THR3 1501 aa17.86■□□□□ 0.45
SF3B2-208ENST00000529994 KCNA6P17658 529 aa17.85■□□□□ 0.45
SF3B2-208ENST00000529994 MAP3K1Q13233 1512 aa17.84■□□□□ 0.45
SF3B2-208ENST00000529994 KANK1Q14678 1352 aa17.84■□□□□ 0.45
SF3B2-208ENST00000529994 BCANQ96GW7 911 aa17.83■□□□□ 0.44
SF3B2-208ENST00000529994 PTPN23Q9H3S7 1636 aa17.83■□□□□ 0.44
SF3B2-208ENST00000529994 CHIC2Q9UKJ5 165 aa17.82■□□□□ 0.44
SF3B2-208ENST00000529994 TET3O43151 1660 aa17.82■□□□□ 0.44
SF3B2-208ENST00000529994 SETD1AO15047 1707 aaKnown RBP17.81■□□□□ 0.44
SF3B2-208ENST00000529994 KDM5AP29375 1690 aaKnown RBP17.81■□□□□ 0.44
SF3B2-208ENST00000529994 DAPK1P53355 1430 aa17.8■□□□□ 0.44
SF3B2-208ENST00000529994 PHLPP1O60346 1717 aa17.78■□□□□ 0.44
SF3B2-208ENST00000529994 MSH6P52701 1360 aa17.78■□□□□ 0.44
SF3B2-208ENST00000529994 ADGRB3O60242 1522 aa17.77■□□□□ 0.43
SF3B2-208ENST00000529994 LMTK2Q8IWU2 1503 aa17.77■□□□□ 0.43
SF3B2-208ENST00000529994 NWD1Q149M9 1564 aa17.76■□□□□ 0.43
SF3B2-208ENST00000529994 SLAIN2Q9P270 581 aa17.76■□□□□ 0.43
SF3B2-208ENST00000529994 MYO5BQ9ULV0 1848 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms