RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 FYCO1Q9BQS8 1478 aa17.41■□□□□ 0.38
USF1-208ENST00000528768 LRRIQ1Q96JM4 1722 aa17.41■□□□□ 0.38
USF1-208ENST00000528768 CASKIN1Q8WXD9 1431 aa17.4■□□□□ 0.38
USF1-208ENST00000528768 DNMT1P26358 1616 aaKnown RBP17.39■□□□□ 0.38
USF1-208ENST00000528768 SYCP2Q9BX26 1530 aa17.39■□□□□ 0.37
USF1-208ENST00000528768 GGT6Q6P531 493 aa17.39■□□□□ 0.37
USF1-208ENST00000528768 ZNF777Q9ULD5 760 aaPredicted RBP17.39■□□□□ 0.37
USF1-208ENST00000528768 CCNB3Q8WWL7 1395 aa17.38■□□□□ 0.37
USF1-208ENST00000528768 INO80Q9ULG1 1556 aaPredicted RBP17.37■□□□□ 0.37
USF1-208ENST00000528768 POLR1AO95602 1720 aaPredicted RBP17.37■□□□□ 0.37
USF1-208ENST00000528768 LRRC9Q6ZRR7 1453 aa17.37■□□□□ 0.37
USF1-208ENST00000528768 HNRNPMP52272 730 aaKnown RBP eCLIP17.36■□□□□ 0.37
USF1-208ENST00000528768 ANKLE2Q86XL3 938 aa17.36■□□□□ 0.37
USF1-208ENST00000528768 CLSPNQ9HAW4 1339 aa17.35■□□□□ 0.37
USF1-208ENST00000528768 ADGBQ8N7X0 1667 aa17.34■□□□□ 0.37
USF1-208ENST00000528768 FAM135AQ9P2D6 1515 aa17.34■□□□□ 0.37
USF1-208ENST00000528768 GPATCH8Q9UKJ3 1502 aaKnown RBP17.34■□□□□ 0.37
USF1-208ENST00000528768 NEURL4Q96JN8 1562 aa17.33■□□□□ 0.37
USF1-208ENST00000528768 THEMISQ8N1K5 641 aaPredicted RBP17.33■□□□□ 0.36
USF1-208ENST00000528768 TNRQ92752 1358 aa17.32■□□□□ 0.36
USF1-208ENST00000528768 CFDP1Q9UEE9 299 aaPredicted RBP17.32■□□□□ 0.36
USF1-208ENST00000528768 MED14O60244 1454 aa17.31■□□□□ 0.36
USF1-208ENST00000528768 VWDEQ8N2E2 1590 aa17.3■□□□□ 0.36
USF1-208ENST00000528768 NLRP1Q9C000 1473 aa17.29■□□□□ 0.36
USF1-208ENST00000528768 RTEL1-TNFRSF6BF6WH68 1400 aa17.29■□□□□ 0.36
USF1-208ENST00000528768 DEPDC5O75140 1603 aa17.29■□□□□ 0.36
USF1-208ENST00000528768 PZPP20742 1482 aa17.28■□□□□ 0.36
USF1-208ENST00000528768 NPHP4O75161 1426 aaPredicted RBP17.28■□□□□ 0.36
USF1-208ENST00000528768 DHX29Q7Z478 1369 aaKnown RBP17.27■□□□□ 0.35
USF1-208ENST00000528768 ALKQ9UM73 1620 aa17.26■□□□□ 0.35
USF1-208ENST00000528768 KDM5DQ9BY66 1539 aa17.25■□□□□ 0.35
USF1-208ENST00000528768 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.25■□□□□ 0.35
USF1-208ENST00000528768 MIA2Q96PC5 1412 aa17.24■□□□□ 0.35
USF1-208ENST00000528768 RNF17Q9BXT8 1623 aaKnown RBP17.24■□□□□ 0.35
USF1-208ENST00000528768 SYNMO15061 1565 aa17.23■□□□□ 0.35
USF1-208ENST00000528768 UGGT1Q9NYU2 1555 aa17.23■□□□□ 0.35
USF1-208ENST00000528768 FBXO31Q5XUX0 539 aaPredicted RBP17.22■□□□□ 0.35
USF1-208ENST00000528768 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.35
USF1-208ENST00000528768 LRRC7Q96NW7 1537 aa17.21■□□□□ 0.35
USF1-208ENST00000528768 IQGAP1P46940 1657 aa17.21■□□□□ 0.35
USF1-208ENST00000528768 MTUS2Q5JR59 1369 aa17.21■□□□□ 0.35
USF1-208ENST00000528768 KIF3BO15066 747 aa17.19■□□□□ 0.34
USF1-208ENST00000528768 MBD5Q9P267 1494 aa17.18■□□□□ 0.34
USF1-208ENST00000528768 RSPH4AQ5TD94 716 aa17.18■□□□□ 0.34
USF1-208ENST00000528768 RGS17Q9UGC6 210 aaPredicted RBP17.18■□□□□ 0.34
USF1-208ENST00000528768 FAM50AQ14320 339 aaKnown RBP17.17■□□□□ 0.34
USF1-208ENST00000528768 DHX57Q6P158 1386 aaKnown RBP17.16■□□□□ 0.34
USF1-208ENST00000528768 ZNF316A6NFI3 1004 aaPredicted RBP17.15■□□□□ 0.34
USF1-208ENST00000528768 ITGAEP38570 1179 aa17.15■□□□□ 0.34
USF1-208ENST00000528768 EHBP1L1Q8N3D4 1523 aa17.14■□□□□ 0.33
USF1-208ENST00000528768 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
USF1-208ENST00000528768 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
USF1-208ENST00000528768 STRCP1A6NGW2 1772 aa17.12■□□□□ 0.33
USF1-208ENST00000528768 FAM135BQ49AJ0 1406 aa17.12■□□□□ 0.33
USF1-208ENST00000528768 CCDC141Q6ZP82 1450 aa17.12■□□□□ 0.33
USF1-208ENST00000528768 ZNF644Q9H582 1327 aaPredicted RBP17.11■□□□□ 0.33
USF1-208ENST00000528768 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
USF1-208ENST00000528768 FGD6Q6ZV73 1430 aa17.09■□□□□ 0.33
USF1-208ENST00000528768 RAB3GAP2Q9H2M9 1393 aa17.08■□□□□ 0.32
USF1-208ENST00000528768 ZC3H13Q5T200 1668 aaKnown RBP17.07■□□□□ 0.32
USF1-208ENST00000528768 SCAF11Q99590 1463 aaKnown RBP17.07■□□□□ 0.32
USF1-208ENST00000528768 MYOM3Q5VTT5 1437 aa17.06■□□□□ 0.32
USF1-208ENST00000528768 POTEAQ6S8J7 498 aa17.06■□□□□ 0.32
USF1-208ENST00000528768 NCOA2Q15596 1464 aa17.05■□□□□ 0.32
USF1-208ENST00000528768 TSPY4P0CV99 314 aa17.05■□□□□ 0.32
USF1-208ENST00000528768 TSPY10P0CW01 314 aa17.05■□□□□ 0.32
USF1-208ENST00000528768 ERVK-7P63135 1459 aa17.04■□□□□ 0.32
USF1-208ENST00000528768 EID1Q9Y6B2 187 aa17.03■□□□□ 0.32
USF1-208ENST00000528768 ABCC3O15438 1527 aa17.02■□□□□ 0.32
USF1-208ENST00000528768 SLIT1O75093 1534 aa17.02■□□□□ 0.32
USF1-208ENST00000528768 ARHGAP23Q9P227 1491 aa17.02■□□□□ 0.32
USF1-208ENST00000528768 CAMSAP2Q08AD1 1489 aa17.01■□□□□ 0.31
USF1-208ENST00000528768 TXNDC2Q86VQ3 553 aa17.01■□□□□ 0.31
USF1-208ENST00000528768 ARHGEF5Q12774 1597 aa17.01■□□□□ 0.31
USF1-208ENST00000528768 UBR1Q8IWV7 1749 aa17.01■□□□□ 0.31
USF1-208ENST00000528768 ACIN1Q9UKV3 1341 aaKnown RBP16.99■□□□□ 0.31
USF1-208ENST00000528768 EIF2AK4Q9P2K8 1649 aaKnown RBP16.99■□□□□ 0.31
USF1-208ENST00000528768 XIRP1Q702N8 1843 aaKnown RBP16.98■□□□□ 0.31
USF1-208ENST00000528768 LTKP29376 864 aa16.97■□□□□ 0.31
USF1-208ENST00000528768 TIMELESSQ9UNS1 1208 aa16.97■□□□□ 0.31
USF1-208ENST00000528768 TMEM94Q12767 1356 aa16.96■□□□□ 0.31
USF1-208ENST00000528768 ROBO1Q9Y6N7 1651 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 JCADQ9P266 1359 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 KCNA6P17658 529 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 PTPN23Q9H3S7 1636 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 ARHGAP31Q2M1Z3 1444 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 MAST1Q9Y2H9 1570 aa16.94■□□□□ 0.3
USF1-208ENST00000528768 HFM1A2PYH4 1435 aa16.93■□□□□ 0.3
USF1-208ENST00000528768 TMEM2Q9UHN6 1383 aa16.92■□□□□ 0.3
USF1-208ENST00000528768 PROSER2Q86WR7 435 aaPredicted RBP16.91■□□□□ 0.3
USF1-208ENST00000528768 ZNF772Q68DY9 489 aaPredicted RBP16.9■□□□□ 0.3
USF1-208ENST00000528768 NKTRP30414 1462 aaKnown RBP16.9■□□□□ 0.3
USF1-208ENST00000528768 MSH6P52701 1360 aa16.89■□□□□ 0.3
USF1-208ENST00000528768 MROH1Q8NDA8 1641 aa16.89■□□□□ 0.29
USF1-208ENST00000528768 KDM5AP29375 1690 aaKnown RBP16.89■□□□□ 0.29
USF1-208ENST00000528768 UPF1Q92900 1129 aaKnown RBP eCLIP16.89■□□□□ 0.29
USF1-208ENST00000528768 STAG3Q9UJ98 1225 aa16.89■□□□□ 0.29
USF1-208ENST00000528768 SETD1AO15047 1707 aaKnown RBP16.89■□□□□ 0.29
USF1-208ENST00000528768 PRDM15P57071 1507 aaPredicted RBP16.89■□□□□ 0.29
USF1-208ENST00000528768 SPATA31A6Q5VVP1 1343 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms