RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ADAMTSL3P82987 1691 aa6.93□□□□□ -1.3
CHMP4A-202ENST00000524955 RIMS1Q86UR5 1692 aaKnown RBP6.93□□□□□ -1.3
CHMP4A-202ENST00000524955 ROCK1Q13464 1354 aa6.93□□□□□ -1.3
CHMP4A-202ENST00000524955 PTPRMP28827 1452 aa6.92□□□□□ -1.3
CHMP4A-202ENST00000524955 NAIPQ13075 1403 aa6.92□□□□□ -1.3
CHMP4A-202ENST00000524955 ERBINQ96RT1 1412 aa6.92□□□□□ -1.3
CHMP4A-202ENST00000524955 ZMYM3Q14202 1370 aa6.91□□□□□ -1.3
CHMP4A-202ENST00000524955 NUP155O75694 1391 aa6.9□□□□□ -1.31
CHMP4A-202ENST00000524955 MROH1Q8NDA8 1641 aa6.9□□□□□ -1.31
CHMP4A-202ENST00000524955 CLTCQ00610 1675 aaKnown RBP6.9□□□□□ -1.31
CHMP4A-202ENST00000524955 HSPA2P54652 639 aa6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 TRIM26Q12899 539 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 FOXD1Q16676 465 aa6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 KANK1Q14678 1352 aa6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 HFM1A2PYH4 1435 aa6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 FER1L4A9Z1Z3 1794 aa6.89□□□□□ -1.31
CHMP4A-202ENST00000524955 ABCC3O15438 1527 aa6.88□□□□□ -1.31
CHMP4A-202ENST00000524955 KDM5DQ9BY66 1539 aa6.88□□□□□ -1.31
CHMP4A-202ENST00000524955 RAB3GAP2Q9H2M9 1393 aa6.88□□□□□ -1.31
CHMP4A-202ENST00000524955 PCGF6Q9BYE7 350 aa6.88□□□□□ -1.31
CHMP4A-202ENST00000524955 SENP3Q9H4L4 574 aaPredicted RBP6.88□□□□□ -1.31
CHMP4A-202ENST00000524955 RNF17Q9BXT8 1623 aaKnown RBP6.87□□□□□ -1.31
CHMP4A-202ENST00000524955 EIF2AK4Q9P2K8 1649 aaKnown RBP6.87□□□□□ -1.31
CHMP4A-202ENST00000524955 SETD5Q9C0A6 1442 aa6.87□□□□□ -1.31
CHMP4A-202ENST00000524955 CEP152O94986 1710 aa6.87□□□□□ -1.31
CHMP4A-202ENST00000524955 PRDM15P57071 1507 aaPredicted RBP6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 CNTLNQ9NXG0 1405 aa6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 PKD2Q13563 968 aa6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 SLC4A1APQ9BWU0 796 aaKnown RBP6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 PPP6R1Q9UPN7 881 aa6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 C3P01024 1663 aa6.86□□□□□ -1.31
CHMP4A-202ENST00000524955 NPATQ14207 1427 aa6.85□□□□□ -1.31
CHMP4A-202ENST00000524955 GCC2Q8IWJ2 1684 aa6.85□□□□□ -1.31
CHMP4A-202ENST00000524955 TNRQ92752 1358 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 DEPDC5O75140 1603 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 CAMSAP1Q5T5Y3 1602 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 UNC13BO14795 1591 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 VWDEQ8N2E2 1590 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 CHGAP10645 457 aaKnown RBP6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 MPHOSPH9Q99550 1183 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 FAM135AQ9P2D6 1515 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 PZPP20742 1482 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 ERVK-7P63135 1459 aa6.84□□□□□ -1.31
CHMP4A-202ENST00000524955 UGGT1Q9NYU2 1555 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 EFCAB6Q5THR3 1501 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 LMTK2Q8IWU2 1503 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 MROH2AA6NES4 1674 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 LMTK3Q96Q04 1460 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 IDI1Q13907 227 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 NUTM2DQ5VT03 806 aaPredicted RBP6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 UHRF1BP1Q6BDS2 1440 aa6.82□□□□□ -1.32
CHMP4A-202ENST00000524955 NCKAP5LQ9HCH0 1330 aa6.81□□□□□ -1.32
CHMP4A-202ENST00000524955 IQGAP3Q86VI3 1631 aa6.81□□□□□ -1.32
CHMP4A-202ENST00000524955 STAG3Q9UJ98 1225 aa6.81□□□□□ -1.32
CHMP4A-202ENST00000524955 ZC3H13Q5T200 1668 aaKnown RBP6.81□□□□□ -1.32
CHMP4A-202ENST00000524955 SYNMO15061 1565 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 NOS1P29475 1434 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 ARHGAP31Q2M1Z3 1444 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 SPATA31D1Q6ZQQ2 1576 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 E9PCH4 1651 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 TET3O43151 1660 aa6.8□□□□□ -1.32
CHMP4A-202ENST00000524955 MYO3AQ8NEV4 1616 aa6.79□□□□□ -1.32
CHMP4A-202ENST00000524955 PREX1Q8TCU6 1659 aa6.79□□□□□ -1.32
CHMP4A-202ENST00000524955 PLA2R1Q13018 1463 aa6.79□□□□□ -1.32
CHMP4A-202ENST00000524955 CFAP65Q6ZU64 1925 aaKnown RBP6.78□□□□□ -1.32
CHMP4A-202ENST00000524955 RGL3Q3MIN7 710 aa6.78□□□□□ -1.32
CHMP4A-202ENST00000524955 ZNF326Q5BKZ1 582 aaKnown RBP6.78□□□□□ -1.32
CHMP4A-202ENST00000524955 A2ML1A8K2U0 1454 aa6.78□□□□□ -1.32
CHMP4A-202ENST00000524955 CEP170BQ9Y4F5 1589 aaPredicted RBP6.78□□□□□ -1.32
CHMP4A-202ENST00000524955 PIK3C2BO00750 1634 aa6.77□□□□□ -1.33
CHMP4A-202ENST00000524955 LTKP29376 864 aa6.77□□□□□ -1.33
CHMP4A-202ENST00000524955 THEMISQ8N1K5 641 aaPredicted RBP6.77□□□□□ -1.33
CHMP4A-202ENST00000524955 RPRD2Q5VT52 1461 aaKnown RBP6.77□□□□□ -1.33
CHMP4A-202ENST00000524955 NLRP1Q9C000 1473 aa6.77□□□□□ -1.33
CHMP4A-202ENST00000524955 PTPRTO14522 1441 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 HRCP23327 699 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 NEUROD1Q13562 356 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 TXNDC2Q86VQ3 553 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 BCANQ96GW7 911 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 SIN3AQ96ST3 1273 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 SLC52A1Q9NWF4 448 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 CLTCL1P53675 1640 aa6.76□□□□□ -1.33
CHMP4A-202ENST00000524955 DHX57Q6P158 1386 aaKnown RBP6.75□□□□□ -1.33
CHMP4A-202ENST00000524955 ANKLE2Q86XL3 938 aa6.75□□□□□ -1.33
CHMP4A-202ENST00000524955 PPP1R15AO75807 674 aaPredicted RBP6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 SLC26A8Q96RN1 970 aa6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 KDM2AQ9Y2K7 1162 aa6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 TRPM2O94759 1503 aa6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 CCDC144AA2RUR9 1427 aa6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 RIMS2Q9UQ26 1411 aa6.74□□□□□ -1.33
CHMP4A-202ENST00000524955 SPHKAPQ2M3C7 1700 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 ANKRD30BQ9BXX2 1392 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 TMEM2Q9UHN6 1383 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 ADGRB3O60242 1522 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 EID1Q9Y6B2 187 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 ZNF142P52746 1687 aaPredicted RBP6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 UBR1Q8IWV7 1749 aa6.73□□□□□ -1.33
CHMP4A-202ENST00000524955 TMEM131LA2VDJ0 1609 aa6.72□□□□□ -1.33
CHMP4A-202ENST00000524955 RBM33Q96EV2 1170 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-202ENST00000524955 NPHP4O75161 1426 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms