RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, human

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SQSTM1-215	ENST00000514093	KIF3B	O15066	747 aa		32.89	■■■□□ 2.86
SQSTM1-215	ENST00000514093	TNR	Q92752	1358 aa		32.88	■■■□□ 2.85
SQSTM1-215	ENST00000514093	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.86	■■■□□ 2.85
SQSTM1-215	ENST00000514093	TOM1	O60784	492 aa		32.84	■■■□□ 2.85
SQSTM1-215	ENST00000514093	NEURL4	Q96JN8	1562 aa		32.83	■■■□□ 2.85
SQSTM1-215	ENST00000514093	SHANK2	Q9UPX8	1470 aa		32.82	■■■□□ 2.84
SQSTM1-215	ENST00000514093	POLR1A	O95602	1720 aa	Predicted RBP	32.81	■■■□□ 2.84
SQSTM1-215	ENST00000514093	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.81	■■■□□ 2.84	8e-7	■■■■□ 23.3
SQSTM1-215	ENST00000514093	CPS1	P31327	1500 aa		32.8	■■■□□ 2.84
SQSTM1-215	ENST00000514093	WASHC2C	Q9Y4E1	1318 aa		32.79	■■■□□ 2.84
SQSTM1-215	ENST00000514093	ANKLE2	Q86XL3	938 aa		32.79	■■■□□ 2.84
SQSTM1-215	ENST00000514093	MED1	Q15648	1581 aa	Predicted RBP	32.79	■■■□□ 2.84
SQSTM1-215	ENST00000514093	EHBP1L1	Q8N3D4	1523 aa		32.78	■■■□□ 2.84
SQSTM1-215	ENST00000514093	PZP	P20742	1482 aa		32.78	■■■□□ 2.84
SQSTM1-215	ENST00000514093	KDM5D	Q9BY66	1539 aa		32.76	■■■□□ 2.83
SQSTM1-215	ENST00000514093	CEP162	Q5TB80	1403 aa		32.76	■■■□□ 2.83
SQSTM1-215	ENST00000514093	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.74	■■■□□ 2.83
SQSTM1-215	ENST00000514093	CCDC141	Q6ZP82	1450 aa		32.73	■■■□□ 2.83
SQSTM1-215	ENST00000514093	MIA2	Q96PC5	1412 aa		32.72	■■■□□ 2.83
SQSTM1-215	ENST00000514093	VWDE	Q8N2E2	1590 aa		32.7	■■■□□ 2.83
SQSTM1-215	ENST00000514093	CAMSAP2	Q08AD1	1489 aa		32.69	■■■□□ 2.82
SQSTM1-215	ENST00000514093	SENP3	Q9H4L4	574 aa	Predicted RBP	32.68	■■■□□ 2.82
SQSTM1-215	ENST00000514093	NPHP4	O75161	1426 aa	Predicted RBP	32.68	■■■□□ 2.82
SQSTM1-215	ENST00000514093	UGGT1	Q9NYU2	1555 aa		32.67	■■■□□ 2.82
SQSTM1-215	ENST00000514093	RSPH4A	Q5TD94	716 aa		32.65	■■■□□ 2.82
SQSTM1-215	ENST00000514093	NCOA2	Q15596	1464 aa		32.65	■■■□□ 2.82
SQSTM1-215	ENST00000514093	NLRP1	Q9C000	1473 aa		32.65	■■■□□ 2.82
SQSTM1-215	ENST00000514093	FAM135A	Q9P2D6	1515 aa		32.65	■■■□□ 2.82
SQSTM1-215	ENST00000514093	ALK	Q9UM73	1620 aa		32.63	■■■□□ 2.81
SQSTM1-215	ENST00000514093	PHF23	Q9BUL5	403 aa	Predicted RBP	32.63	■■■□□ 2.81
SQSTM1-215	ENST00000514093	MED14	O60244	1454 aa		32.62	■■■□□ 2.81
SQSTM1-215	ENST00000514093	TSPY4	P0CV99	314 aa		32.6	■■■□□ 2.81
SQSTM1-215	ENST00000514093	TSPY10	P0CW01	314 aa		32.6	■■■□□ 2.81
SQSTM1-215	ENST00000514093	DEPDC5	O75140	1603 aa		32.59	■■■□□ 2.81
SQSTM1-215	ENST00000514093	IQGAP1	P46940	1657 aa		32.56	■■■□□ 2.8
SQSTM1-215	ENST00000514093	STRCP1	A6NGW2	1772 aa		32.53	■■■□□ 2.8
SQSTM1-215	ENST00000514093	LRRC7	Q96NW7	1537 aa		32.52	■■■□□ 2.8
SQSTM1-215	ENST00000514093	ARHGEF5	Q12774	1597 aa		32.52	■■■□□ 2.8
SQSTM1-215	ENST00000514093	ABCC3	O15438	1527 aa		32.5	■■■□□ 2.79
SQSTM1-215	ENST00000514093	RNF17	Q9BXT8	1623 aa	Known RBP	32.45	■■■□□ 2.79
SQSTM1-215	ENST00000514093	ERVK-7	P63135	1459 aa		32.45	■■■□□ 2.79
SQSTM1-215	ENST00000514093	ZC3H13	Q5T200	1668 aa	Known RBP	32.4	■■■□□ 2.78
SQSTM1-215	ENST00000514093	CFAP65	Q6ZU64	1925 aa	Known RBP	32.4	■■■□□ 2.78
SQSTM1-215	ENST00000514093	SYNM	O15061	1565 aa		32.38	■■■□□ 2.77
SQSTM1-215	ENST00000514093	LTK	P29376	864 aa		32.38	■■■□□ 2.77
SQSTM1-215	ENST00000514093	MAST1	Q9Y2H9	1570 aa		32.37	■■■□□ 2.77
SQSTM1-215	ENST00000514093	MROH1	Q8NDA8	1641 aa		32.37	■■■□□ 2.77
SQSTM1-215	ENST00000514093	TXNDC2	Q86VQ3	553 aa		32.36	■■■□□ 2.77
SQSTM1-215	ENST00000514093	UBR1	Q8IWV7	1749 aa		32.36	■■■□□ 2.77
SQSTM1-215	ENST00000514093	CEP152	O94986	1710 aa		32.35	■■■□□ 2.77
SQSTM1-215	ENST00000514093	SCAF11	Q99590	1463 aa	Known RBP	32.35	■■■□□ 2.77
SQSTM1-215	ENST00000514093	LRRC9	Q6ZRR7	1453 aa		32.34	■■■□□ 2.77
SQSTM1-215	ENST00000514093	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.33	■■■□□ 2.77
SQSTM1-215	ENST00000514093	RGS17	Q9UGC6	210 aa	Predicted RBP	32.33	■■■□□ 2.77
SQSTM1-215	ENST00000514093	KANK4	Q5T7N3	995 aa	Predicted RBP	32.29	■■■□□ 2.76
SQSTM1-215	ENST00000514093	ARHGAP23	Q9P227	1491 aa		32.27	■■■□□ 2.76
SQSTM1-215	ENST00000514093	SLIT1	O75093	1534 aa		32.25	■■■□□ 2.75
SQSTM1-215	ENST00000514093	EID1	Q9Y6B2	187 aa		32.24	■■■□□ 2.75
SQSTM1-215	ENST00000514093	DUOX2	Q9NRD8	1548 aa		32.24	■■■□□ 2.75
SQSTM1-215	ENST00000514093	XIRP1	Q702N8	1843 aa	Known RBP	32.23	■■■□□ 2.75
SQSTM1-215	ENST00000514093	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.23	■■■□□ 2.75
SQSTM1-215	ENST00000514093	MYOM3	Q5VTT5	1437 aa		32.21	■■■□□ 2.75
SQSTM1-215	ENST00000514093	VPS8	Q8N3P4	1428 aa		32.2	■■■□□ 2.75
SQSTM1-215	ENST00000514093	RRP7BP	Q9NSQ0	103 aa		32.2	■■■□□ 2.75
SQSTM1-215	ENST00000514093	ARHGAP31	Q2M1Z3	1444 aa		32.18	■■■□□ 2.74
SQSTM1-215	ENST00000514093	STAG3	Q9UJ98	1225 aa		32.18	■■■□□ 2.74
SQSTM1-215	ENST00000514093	KIF15	Q9NS87	1388 aa		32.18	■■■□□ 2.74
SQSTM1-215	ENST00000514093	TMEM2	Q9UHN6	1383 aa		32.16	■■■□□ 2.74
SQSTM1-215	ENST00000514093	PIK3C2B	O00750	1634 aa		32.15	■■■□□ 2.74
SQSTM1-215	ENST00000514093	RBM33	Q96EV2	1170 aa	Known RBP	32.15	■■■□□ 2.74
SQSTM1-215	ENST00000514093	PRDM15	P57071	1507 aa	Predicted RBP	32.15	■■■□□ 2.74
SQSTM1-215	ENST00000514093	FAM135B	Q49AJ0	1406 aa		32.14	■■■□□ 2.74
SQSTM1-215	ENST00000514093	TMEM94	Q12767	1356 aa		32.13	■■■□□ 2.73
SQSTM1-215	ENST00000514093	LOC105371045	A0A1W2PR82	267 aa		32.12	■■■□□ 2.73
SQSTM1-215	ENST00000514093	POTEA	Q6S8J7	498 aa		32.12	■■■□□ 2.73
SQSTM1-215	ENST00000514093	SLC26A8	Q96RN1	970 aa		32.11	■■■□□ 2.73
SQSTM1-215	ENST00000514093	ABCC5	O15440	1437 aa		32.1	■■■□□ 2.73
SQSTM1-215	ENST00000514093	IDI1	Q13907	227 aa		32.1	■■■□□ 2.73
SQSTM1-215	ENST00000514093	ERBIN	Q96RT1	1412 aa		32.09	■■■□□ 2.73
SQSTM1-215	ENST00000514093	KCNA6	P17658	529 aa		32.08	■■■□□ 2.73
SQSTM1-215	ENST00000514093	PROSER2	Q86WR7	435 aa	Predicted RBP	32.08	■■■□□ 2.73
SQSTM1-215	ENST00000514093	MAP3K1	Q13233	1512 aa		32.05	■■■□□ 2.72
SQSTM1-215	ENST00000514093	KANK1	Q14678	1352 aa		32.05	■■■□□ 2.72
SQSTM1-215	ENST00000514093	EFCAB6	Q5THR3	1501 aa		32.05	■■■□□ 2.72
SQSTM1-215	ENST00000514093	ROBO1	Q9Y6N7	1651 aa		32.02	■■■□□ 2.72
SQSTM1-215	ENST00000514093	CROCC2	H7BZ55	1655 aa		32.02	■■■□□ 2.72
SQSTM1-215	ENST00000514093	CHIC2	Q9UKJ5	165 aa		32.01	■■■□□ 2.71
SQSTM1-215	ENST00000514093	TET3	O43151	1660 aa		32	■■■□□ 2.71
SQSTM1-215	ENST00000514093	BCAN	Q96GW7	911 aa		31.99	■■■□□ 2.71
SQSTM1-215	ENST00000514093	DAPK1	P53355	1430 aa		31.99	■■■□□ 2.71
SQSTM1-215	ENST00000514093	PTPN23	Q9H3S7	1636 aa		31.98	■■■□□ 2.71
SQSTM1-215	ENST00000514093	KDM5A	P29375	1690 aa	Known RBP	31.94	■■■□□ 2.7
SQSTM1-215	ENST00000514093	LMTK2	Q8IWU2	1503 aa		31.93	■■■□□ 2.7
SQSTM1-215	ENST00000514093	SLAIN2	Q9P270	581 aa		31.9	■■■□□ 2.7
SQSTM1-215	ENST00000514093	MSH6	P52701	1360 aa		31.9	■■■□□ 2.7
SQSTM1-215	ENST00000514093	ANKRD30A	Q9BXX3	1397 aa		31.9	■■■□□ 2.7
SQSTM1-215	ENST00000514093	NOS1	P29475	1434 aa		31.9	■■■□□ 2.7
SQSTM1-215	ENST00000514093	ADGRB3	O60242	1522 aa		31.89	■■■□□ 2.7
SQSTM1-215	ENST00000514093	NKTR	P30414	1462 aa	Known RBP	31.87	■■■□□ 2.69
SQSTM1-215	ENST00000514093	NWD1	Q149M9	1564 aa		31.86	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms