RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 SLC34A2O95436 690 aa7.64□□□□□ -1.19
LSM6-205ENST00000507449 PRIM1P49642 420 aaKnown RBP7.64□□□□□ -1.19
LSM6-205ENST00000507449 SLC24A3Q9HC58 644 aa7.64□□□□□ -1.19
LSM6-205ENST00000507449 A0A0G2JS52 829 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 GRXCR2A6NFK2 248 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 EVI5O60447 810 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 OSBPP22059 807 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 BARGINQ6ZT62 677 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 GPIHBP1Q8IV16 184 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 KCNH8Q96L42 1107 aa7.63□□□□□ -1.19
LSM6-205ENST00000507449 LAPTM4AQ15012 233 aa7.62□□□□□ -1.19
LSM6-205ENST00000507449 DDX12PQ92771 950 aa7.62□□□□□ -1.19
LSM6-205ENST00000507449 KHSRPQ92945 711 aaKnown RBP eCLIP7.61□□□□□ -1.19
LSM6-205ENST00000507449 NUDT7P0C024 238 aa7.6□□□□□ -1.19
LSM6-205ENST00000507449 ANO8Q9HCE9 1232 aaPredicted RBP7.6□□□□□ -1.19
LSM6-205ENST00000507449 KDM4FA0A1W2PPD8 638 aa7.59□□□□□ -1.19
LSM6-205ENST00000507449 TBC1D12O60347 775 aa7.59□□□□□ -1.19
LSM6-205ENST00000507449 BRPF1P55201 1214 aaPredicted RBP7.59□□□□□ -1.19
LSM6-205ENST00000507449 LHX6Q9UPM6 363 aa7.59□□□□□ -1.19
LSM6-205ENST00000507449 PTPN5P54829 565 aa7.58□□□□□ -1.2
LSM6-205ENST00000507449 PCDHGA4Q9Y5G9 962 aa7.58□□□□□ -1.2
LSM6-205ENST00000507449 HRO43593 1189 aa7.56□□□□□ -1.2
LSM6-205ENST00000507449 POTEEQ6S8J3 1075 aa7.55□□□□□ -1.2
LSM6-205ENST00000507449 NUTM2FA1L443 756 aa7.54□□□□□ -1.2
LSM6-205ENST00000507449 PHF14O94880 888 aa7.52□□□□□ -1.21
LSM6-205ENST00000507449 FECHP22830 423 aa7.52□□□□□ -1.21
LSM6-205ENST00000507449 AK7Q96M32 723 aa7.52□□□□□ -1.21
LSM6-205ENST00000507449 CDHR5Q9HBB8 845 aa7.52□□□□□ -1.21
LSM6-205ENST00000507449 PCDHGA10Q9Y5H3 936 aa7.52□□□□□ -1.21
LSM6-205ENST00000507449 GOLGA8CPA6NN73 597 aa7.51□□□□□ -1.21
LSM6-205ENST00000507449 EN1Q05925 392 aaPredicted RBP7.51□□□□□ -1.21
LSM6-205ENST00000507449 PTGDRQ13258 359 aa7.51□□□□□ -1.21
LSM6-205ENST00000507449 NEUROD2Q15784 382 aa7.51□□□□□ -1.21
LSM6-205ENST00000507449 KRI1Q8N9T8 703 aaKnown RBP7.51□□□□□ -1.21
LSM6-205ENST00000507449 TRIM66O15016 1216 aa7.5□□□□□ -1.21
LSM6-205ENST00000507449 GNPATO15228 680 aa7.5□□□□□ -1.21
LSM6-205ENST00000507449 NPDC1Q9NQX5 325 aaPredicted RBP7.5□□□□□ -1.21
LSM6-205ENST00000507449 FCHSD2O94868 740 aa7.49□□□□□ -1.21
LSM6-205ENST00000507449 TMEM132AQ24JP5 1023 aa7.49□□□□□ -1.21
LSM6-205ENST00000507449 TSR1Q2NL82 804 aaKnown RBP7.49□□□□□ -1.21
LSM6-205ENST00000507449 TRAF7Q6Q0C0 670 aa7.49□□□□□ -1.21
LSM6-205ENST00000507449 EPAS1Q99814 870 aa7.49□□□□□ -1.21
LSM6-205ENST00000507449 FOSBP53539 338 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 MAP2K5Q13163 448 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 HIC1Q14526 733 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 PPP4R3BQ5MIZ7 849 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 CCDC102AQ96A19 550 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 RBM33Q96EV2 1170 aaKnown RBP7.48□□□□□ -1.21
LSM6-205ENST00000507449 JPH4Q96JJ6 628 aa7.48□□□□□ -1.21
LSM6-205ENST00000507449 GPBP1L1Q9HC44 474 aaPredicted RBP7.48□□□□□ -1.21
LSM6-205ENST00000507449 IRF6O14896 467 aa7.47□□□□□ -1.21
LSM6-205ENST00000507449 MAP3K7O43318 606 aa7.47□□□□□ -1.21
LSM6-205ENST00000507449 TYW1BQ6NUM6 668 aa7.47□□□□□ -1.21
LSM6-205ENST00000507449 MINK1Q8N4C8 1332 aaPredicted RBP7.47□□□□□ -1.21
LSM6-205ENST00000507449 PDE4DQ08499 809 aa7.46□□□□□ -1.22
LSM6-205ENST00000507449 DMRTA1Q5VZB9 504 aa7.45□□□□□ -1.22
LSM6-205ENST00000507449 PSEN2P49810 448 aa7.44□□□□□ -1.22
LSM6-205ENST00000507449 THSD4Q6ZMP0 1018 aa7.44□□□□□ -1.22
LSM6-205ENST00000507449 ZNF454Q8N9F8 522 aa7.44□□□□□ -1.22
LSM6-205ENST00000507449 FBXW7Q969H0 707 aa7.44□□□□□ -1.22
LSM6-205ENST00000507449 ADAM33Q9BZ11 813 aa7.43□□□□□ -1.22
LSM6-205ENST00000507449 KDM4CQ9H3R0 1056 aa7.43□□□□□ -1.22
LSM6-205ENST00000507449 AMHR2Q16671 573 aa7.42□□□□□ -1.22
LSM6-205ENST00000507449 ZDHHC16Q969W1 377 aa7.42□□□□□ -1.22
LSM6-205ENST00000507449 C6orf132Q5T0Z8 1188 aa7.41□□□□□ -1.22
LSM6-205ENST00000507449 WNT2BQ93097 391 aa7.41□□□□□ -1.22
LSM6-205ENST00000507449 PARP9Q8IXQ6 854 aa7.4□□□□□ -1.22
LSM6-205ENST00000507449 PHOX2BQ99453 314 aa7.4□□□□□ -1.22
LSM6-205ENST00000507449 GFRA3O60609 400 aa7.39□□□□□ -1.23
LSM6-205ENST00000507449 KCNK17Q96T54 332 aa7.39□□□□□ -1.23
LSM6-205ENST00000507449 GTF3C3Q9Y5Q9 886 aa7.39□□□□□ -1.23
LSM6-205ENST00000507449 FAM161AQ3B820 660 aa7.38□□□□□ -1.23
LSM6-205ENST00000507449 ZNF787Q6DD87 383 aa7.38□□□□□ -1.23
LSM6-205ENST00000507449 PADI6Q6TGC4 694 aa7.38□□□□□ -1.23
LSM6-205ENST00000507449 TTC13Q8NBP0 860 aa7.38□□□□□ -1.23
LSM6-205ENST00000507449 VPS9D1Q9Y2B5 631 aa7.38□□□□□ -1.23
LSM6-205ENST00000507449 MRPL50Q8N5N7 158 aaKnown RBP7.37□□□□□ -1.23
LSM6-205ENST00000507449 REPIN1Q9BWE0 567 aaKnown RBP7.37□□□□□ -1.23
LSM6-205ENST00000507449 COL9A1P20849 921 aa7.36□□□□□ -1.23
LSM6-205ENST00000507449 TMUB1Q9BVT8 246 aa7.36□□□□□ -1.23
LSM6-205ENST00000507449 FAM117AQ9C073 453 aa7.36□□□□□ -1.23
LSM6-205ENST00000507449 FAM198AQ9UFP1 575 aa7.36□□□□□ -1.23
LSM6-205ENST00000507449 ITGBL1O95965 494 aaPredicted RBP7.35□□□□□ -1.23
LSM6-205ENST00000507449 IL27Q8NEV9 243 aa7.35□□□□□ -1.23
LSM6-205ENST00000507449 CERKQ8TCT0 537 aa7.35□□□□□ -1.23
LSM6-205ENST00000507449 SLC4A5Q9BY07 1137 aa7.35□□□□□ -1.23
LSM6-205ENST00000507449 NBPF3Q9H094 633 aa7.35□□□□□ -1.23
LSM6-205ENST00000507449 BCL2L12Q9HB09 334 aa7.35□□□□□ -1.23
LSM6-205ENST00000507449 PLEKHG3A1L390 1219 aa7.34□□□□□ -1.23
LSM6-205ENST00000507449 RBM27Q9P2N5 1060 aaKnown RBP7.34□□□□□ -1.23
LSM6-205ENST00000507449 ADGRG1Q9Y653 693 aa7.34□□□□□ -1.23
LSM6-205ENST00000507449 PRSS12P56730 875 aa7.33□□□□□ -1.24
LSM6-205ENST00000507449 TTLL12Q14166 644 aaPredicted RBP7.33□□□□□ -1.24
LSM6-205ENST00000507449 GIGYF2Q6Y7W6 1299 aaKnown RBP7.33□□□□□ -1.24
LSM6-205ENST00000507449 NYAP1Q6ZVC0 841 aa7.33□□□□□ -1.24
LSM6-205ENST00000507449 METTL3Q86U44 580 aaKnown RBP7.33□□□□□ -1.24
LSM6-205ENST00000507449 C3orf80F5H4A9 247 aa7.32□□□□□ -1.24
LSM6-205ENST00000507449 NRG2O14511 850 aaPredicted RBP7.32□□□□□ -1.24
LSM6-205ENST00000507449 MS4A1P11836 297 aa7.32□□□□□ -1.24
LSM6-205ENST00000507449 NLRP7Q8WX94 980 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms