RNA–Protein interactions for RNA: ENST00000504672.5

PDGFC-204, Transcript of platelet derived growth factor C, humanhuman

TSL 5

Gene PDGFC, Length 786 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-204ENST00000504672 CPS1P31327 1500 aa14.78□□□□□ -0.04
PDGFC-204ENST00000504672 CCDC18Q5T9S5 1454 aa14.77□□□□□ -0.04
PDGFC-204ENST00000504672 KIAA1107Q9UPP5 1409 aa14.77□□□□□ -0.04
PDGFC-204ENST00000504672 CCNB3Q8WWL7 1395 aa14.77□□□□□ -0.04
PDGFC-204ENST00000504672 WASHC2CQ9Y4E1 1318 aa14.77□□□□□ -0.04
PDGFC-204ENST00000504672 CDC42BPAQ5VT25 1732 aa14.77□□□□□ -0.05
PDGFC-204ENST00000504672 ZNF142P52746 1687 aaPredicted RBP14.77□□□□□ -0.05
PDGFC-204ENST00000504672 PLXNC1O60486 1568 aa14.75□□□□□ -0.05
PDGFC-204ENST00000504672 NPHP4O75161 1426 aaPredicted RBP14.75□□□□□ -0.05
PDGFC-204ENST00000504672 ALKQ9UM73 1620 aa14.74□□□□□ -0.05
PDGFC-204ENST00000504672 NEURL4Q96JN8 1562 aa14.74□□□□□ -0.05
PDGFC-204ENST00000504672 DHX29Q7Z478 1369 aaKnown RBP14.73□□□□□ -0.05
PDGFC-204ENST00000504672 POTEAQ6S8J7 498 aa14.73□□□□□ -0.05
PDGFC-204ENST00000504672 VWDEQ8N2E2 1590 aa14.73□□□□□ -0.05
PDGFC-204ENST00000504672 MIA2Q96PC5 1412 aa14.72□□□□□ -0.05
PDGFC-204ENST00000504672 PLEKHH2Q8IVE3 1493 aa14.71□□□□□ -0.05
PDGFC-204ENST00000504672 INO80Q9ULG1 1556 aaPredicted RBP14.71□□□□□ -0.05
PDGFC-204ENST00000504672 LRRC7Q96NW7 1537 aa14.69□□□□□ -0.06
PDGFC-204ENST00000504672 MTUS2Q5JR59 1369 aa14.68□□□□□ -0.06
PDGFC-204ENST00000504672 MBD5Q9P267 1494 aa14.68□□□□□ -0.06
PDGFC-204ENST00000504672 PZPP20742 1482 aa14.67□□□□□ -0.06
PDGFC-204ENST00000504672 FAM135AQ9P2D6 1515 aa14.66□□□□□ -0.06
PDGFC-204ENST00000504672 MED14O60244 1454 aa14.66□□□□□ -0.06
PDGFC-204ENST00000504672 FYCO1Q9BQS8 1478 aa14.66□□□□□ -0.06
PDGFC-204ENST00000504672 UGGT1Q9NYU2 1555 aa14.65□□□□□ -0.06
PDGFC-204ENST00000504672 LTKP29376 864 aa14.64□□□□□ -0.07
PDGFC-204ENST00000504672 RBM33Q96EV2 1170 aaKnown RBP14.64□□□□□ -0.07
PDGFC-204ENST00000504672 RTEL1-TNFRSF6BF6WH68 1400 aa14.64□□□□□ -0.07
PDGFC-204ENST00000504672 POLR1AO95602 1720 aaPredicted RBP14.63□□□□□ -0.07
PDGFC-204ENST00000504672 TXNDC2Q86VQ3 553 aa14.63□□□□□ -0.07
PDGFC-204ENST00000504672 NLRP1Q9C000 1473 aa14.63□□□□□ -0.07
PDGFC-204ENST00000504672 ADGBQ8N7X0 1667 aa14.61□□□□□ -0.07
PDGFC-204ENST00000504672 KDM5DQ9BY66 1539 aa14.61□□□□□ -0.07
PDGFC-204ENST00000504672 STRCP1A6NGW2 1772 aa14.6□□□□□ -0.07
PDGFC-204ENST00000504672 TSPY4P0CV99 314 aa14.59□□□□□ -0.07
PDGFC-204ENST00000504672 TSPY10P0CW01 314 aa14.59□□□□□ -0.07
PDGFC-204ENST00000504672 DEPDC5O75140 1603 aa14.57□□□□□ -0.08
PDGFC-204ENST00000504672 IQGAP1P46940 1657 aa14.57□□□□□ -0.08
PDGFC-204ENST00000504672 RSPH4AQ5TD94 716 aa14.56□□□□□ -0.08
PDGFC-204ENST00000504672 PROSER2Q86WR7 435 aaPredicted RBP14.55□□□□□ -0.08
PDGFC-204ENST00000504672 EID1Q9Y6B2 187 aa14.55□□□□□ -0.08
PDGFC-204ENST00000504672 FAM135BQ49AJ0 1406 aa14.55□□□□□ -0.08
PDGFC-204ENST00000504672 TIAM1Q13009 1591 aa14.55□□□□□ -0.08
PDGFC-204ENST00000504672 SLC26A8Q96RN1 970 aa14.54□□□□□ -0.08
PDGFC-204ENST00000504672 TMEM94Q12767 1356 aa14.54□□□□□ -0.08
PDGFC-204ENST00000504672 CCDC141Q6ZP82 1450 aa14.54□□□□□ -0.08
PDGFC-204ENST00000504672 RNF17Q9BXT8 1623 aaKnown RBP14.54□□□□□ -0.08
PDGFC-204ENST00000504672 SCAF11Q99590 1463 aaKnown RBP14.52□□□□□ -0.08
PDGFC-204ENST00000504672 ERVK-7P63135 1459 aa14.51□□□□□ -0.09
PDGFC-204ENST00000504672 NCOA2Q15596 1464 aa14.51□□□□□ -0.09
PDGFC-204ENST00000504672 TRIM52Q96A61 297 aa14.51□□□□□ -0.09
PDGFC-204ENST00000504672 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.51□□□□□ -0.09
PDGFC-204ENST00000504672 STAG3Q9UJ98 1225 aa14.51□□□□□ -0.09
PDGFC-204ENST00000504672 CAMSAP2Q08AD1 1489 aa14.5□□□□□ -0.09
PDGFC-204ENST00000504672 CEP162Q5TB80 1403 aa14.5□□□□□ -0.09
PDGFC-204ENST00000504672 KCNA6P17658 529 aa14.5□□□□□ -0.09
PDGFC-204ENST00000504672 UPF1Q92900 1129 aaKnown RBP eCLIP14.5□□□□□ -0.09
PDGFC-204ENST00000504672 ABCC3O15438 1527 aa14.5□□□□□ -0.09
PDGFC-204ENST00000504672 SLAIN2Q9P270 581 aa14.49□□□□□ -0.09
PDGFC-204ENST00000504672 BCANQ96GW7 911 aa14.48□□□□□ -0.09
PDGFC-204ENST00000504672 SYNMO15061 1565 aa14.47□□□□□ -0.09
PDGFC-204ENST00000504672 ZC3H13Q5T200 1668 aaKnown RBP14.46□□□□□ -0.09
PDGFC-204ENST00000504672 IDI1Q13907 227 aa14.45□□□□□ -0.1
PDGFC-204ENST00000504672 MEX3CQ5U5Q3 659 aaKnown RBP14.45□□□□□ -0.1
PDGFC-204ENST00000504672 EHBP1L1Q8N3D4 1523 aa14.45□□□□□ -0.1
PDGFC-204ENST00000504672 TMEM2Q9UHN6 1383 aa14.45□□□□□ -0.1
PDGFC-204ENST00000504672 ARHGAP23Q9P227 1491 aa14.44□□□□□ -0.1
PDGFC-204ENST00000504672 SETD1AO15047 1707 aaKnown RBP14.44□□□□□ -0.1
PDGFC-204ENST00000504672 RRP7BPQ9NSQ0 103 aa14.43□□□□□ -0.1
PDGFC-204ENST00000504672 SRCAPQ6ZRS2 3230 aa14.43□□□□□ -0.1
PDGFC-204ENST00000504672 SLIT1O75093 1534 aa14.42□□□□□ -0.1
PDGFC-204ENST00000504672 UBR1Q8IWV7 1749 aa14.42□□□□□ -0.1
PDGFC-204ENST00000504672 XIRP1Q702N8 1843 aaKnown RBP14.42□□□□□ -0.1
PDGFC-204ENST00000504672 CFAP65Q6ZU64 1925 aaKnown RBP14.42□□□□□ -0.1
PDGFC-204ENST00000504672 JCADQ9P266 1359 aa14.42□□□□□ -0.1
PDGFC-204ENST00000504672 ROBO1Q9Y6N7 1651 aa14.41□□□□□ -0.1
PDGFC-204ENST00000504672 MSH6P52701 1360 aa14.39□□□□□ -0.11
PDGFC-204ENST00000504672 NUTM2BA6NNL0 878 aaPredicted RBP14.39□□□□□ -0.11
PDGFC-204ENST00000504672 NUTM2EB1AL46 878 aaPredicted RBP14.39□□□□□ -0.11
PDGFC-204ENST00000504672 ZNF772Q68DY9 489 aaPredicted RBP14.39□□□□□ -0.11
PDGFC-204ENST00000504672 NUTM2AQ8IVF1 878 aaPredicted RBP14.39□□□□□ -0.11
PDGFC-204ENST00000504672 RXRBP28702 533 aa14.38□□□□□ -0.11
PDGFC-204ENST00000504672 C14orf37Q86TY3 774 aa14.38□□□□□ -0.11
PDGFC-204ENST00000504672 ARHGEF5Q12774 1597 aa14.38□□□□□ -0.11
PDGFC-204ENST00000504672 MAP3K1Q13233 1512 aa14.37□□□□□ -0.11
PDGFC-204ENST00000504672 KANK4Q5T7N3 995 aaPredicted RBP14.37□□□□□ -0.11
PDGFC-204ENST00000504672 MROH1Q8NDA8 1641 aa14.37□□□□□ -0.11
PDGFC-204ENST00000504672 ARHGAP31Q2M1Z3 1444 aa14.35□□□□□ -0.11
PDGFC-204ENST00000504672 LRP6O75581 1613 aa14.35□□□□□ -0.11
PDGFC-204ENST00000504672 CEP152O94986 1710 aa14.34□□□□□ -0.11
PDGFC-204ENST00000504672 PRDM15P57071 1507 aaPredicted RBP14.34□□□□□ -0.11
PDGFC-204ENST00000504672 SPATA31A6Q5VVP1 1343 aa14.34□□□□□ -0.11
PDGFC-204ENST00000504672 KIF15Q9NS87 1388 aa14.34□□□□□ -0.11
PDGFC-204ENST00000504672 PIK3C2BO00750 1634 aa14.33□□□□□ -0.11
PDGFC-204ENST00000504672 NUTM2DQ5VT03 806 aaPredicted RBP14.33□□□□□ -0.12
PDGFC-204ENST00000504672 CHIC2Q9UKJ5 165 aa14.33□□□□□ -0.12
PDGFC-204ENST00000504672 TET3O43151 1660 aa14.33□□□□□ -0.12
PDGFC-204ENST00000504672 LRRC9Q6ZRR7 1453 aa14.32□□□□□ -0.12
PDGFC-204ENST00000504672 EFCAB6Q5THR3 1501 aa14.31□□□□□ -0.12
PDGFC-204ENST00000504672 PPP1R15AO75807 674 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms