RNA–Protein interactions for RNA: ENST00000491334.1

CDK5RAP2-218, Transcript of CDK5 regulatory subunit associated protein 2, human

TSL 2

Gene CDK5RAP2, Length 546 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP2-218	ENST00000491334	DHX29	Q7Z478	1369 aa	Known RBP	31.24	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	TNR	Q92752	1358 aa		31.24	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	ADGB	Q8N7X0	1667 aa		31.24	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.23	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	MED1	Q15648	1581 aa	Predicted RBP	31.22	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.22	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	KIF3B	O15066	747 aa		31.21	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	PHF23	Q9BUL5	403 aa	Predicted RBP	31.21	■■■□□ 2.59
CDK5RAP2-218	ENST00000491334	WASHC2C	Q9Y4E1	1318 aa		31.18	■■■□□ 2.58
CDK5RAP2-218	ENST00000491334	MBD5	Q9P267	1494 aa		31.16	■■■□□ 2.58
CDK5RAP2-218	ENST00000491334	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.16	■■■□□ 2.58
CDK5RAP2-218	ENST00000491334	NEURL4	Q96JN8	1562 aa		31.13	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	PZP	P20742	1482 aa		31.12	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	POLR1A	O95602	1720 aa	Predicted RBP	31.12	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	RSPH4A	Q5TD94	716 aa		31.11	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	MIA2	Q96PC5	1412 aa		31.1	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	NPHP4	O75161	1426 aa	Predicted RBP	31.07	■■■□□ 2.57
CDK5RAP2-218	ENST00000491334	KDM5D	Q9BY66	1539 aa		31.06	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	FAM135A	Q9P2D6	1515 aa		31.06	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	NLRP1	Q9C000	1473 aa		31.06	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	MED14	O60244	1454 aa		31.05	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	VWDE	Q8N2E2	1590 aa		31.05	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	TIAM1	Q13009	1591 aa		31.04	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	UGGT1	Q9NYU2	1555 aa		31.03	■■■□□ 2.56
CDK5RAP2-218	ENST00000491334	CEP162	Q5TB80	1403 aa		31	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	DEPDC5	O75140	1603 aa		30.98	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	CCDC141	Q6ZP82	1450 aa		30.98	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	TSPY4	P0CV99	314 aa		30.98	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	TSPY10	P0CW01	314 aa		30.98	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	SENP3	Q9H4L4	574 aa	Predicted RBP	30.98	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	EHBP1L1	Q8N3D4	1523 aa		30.97	■■■□□ 2.55
CDK5RAP2-218	ENST00000491334	ALK	Q9UM73	1620 aa		30.95	■■■□□ 2.54
CDK5RAP2-218	ENST00000491334	LRRC7	Q96NW7	1537 aa		30.91	■■■□□ 2.54
CDK5RAP2-218	ENST00000491334	IQGAP1	P46940	1657 aa		30.89	■■■□□ 2.54
CDK5RAP2-218	ENST00000491334	CAMSAP2	Q08AD1	1489 aa		30.88	■■■□□ 2.53
CDK5RAP2-218	ENST00000491334	NCOA2	Q15596	1464 aa		30.82	■■■□□ 2.53
CDK5RAP2-218	ENST00000491334	RGS17	Q9UGC6	210 aa	Predicted RBP	30.81	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	RNF17	Q9BXT8	1623 aa	Known RBP	30.8	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	STRCP1	A6NGW2	1772 aa		30.79	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	TXNDC2	Q86VQ3	553 aa		30.78	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	SYNM	O15061	1565 aa		30.78	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	ARHGEF5	Q12774	1597 aa		30.77	■■■□□ 2.52
CDK5RAP2-218	ENST00000491334	ABCC3	O15438	1527 aa		30.76	■■■□□ 2.51
CDK5RAP2-218	ENST00000491334	ERVK-7	P63135	1459 aa		30.76	■■■□□ 2.51
CDK5RAP2-218	ENST00000491334	EID1	Q9Y6B2	187 aa		30.74	■■■□□ 2.51
CDK5RAP2-218	ENST00000491334	SCAF11	Q99590	1463 aa	Known RBP	30.74	■■■□□ 2.51
CDK5RAP2-218	ENST00000491334	LTK	P29376	864 aa		30.73	■■■□□ 2.51
CDK5RAP2-218	ENST00000491334	ZC3H13	Q5T200	1668 aa	Known RBP	30.7	■■■□□ 2.5
CDK5RAP2-218	ENST00000491334	FAM135B	Q49AJ0	1406 aa		30.66	■■■□□ 2.5
CDK5RAP2-218	ENST00000491334	UBR1	Q8IWV7	1749 aa		30.64	■■■□□ 2.5
CDK5RAP2-218	ENST00000491334	ARHGAP23	Q9P227	1491 aa		30.63	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	CFAP65	Q6ZU64	1925 aa	Known RBP	30.63	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	POTEA	Q6S8J7	498 aa		30.62	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	SLIT1	O75093	1534 aa		30.62	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	MAST1	Q9Y2H9	1570 aa		30.62	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	EIF2AK4	Q9P2K8	1649 aa	Known RBP	30.62	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	STAG3	Q9UJ98	1225 aa		30.61	■■■□□ 2.49
CDK5RAP2-218	ENST00000491334	ARHGAP31	Q2M1Z3	1444 aa		30.57	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	KCNA6	P17658	529 aa		30.56	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	TMEM94	Q12767	1356 aa		30.55	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	MROH1	Q8NDA8	1641 aa		30.55	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	TMEM2	Q9UHN6	1383 aa		30.54	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	PROSER2	Q86WR7	435 aa	Predicted RBP	30.54	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	DUOX2	Q9NRD8	1548 aa		30.53	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	CEP152	O94986	1710 aa		30.53	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	XIRP1	Q702N8	1843 aa	Known RBP	30.52	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	LRRC9	Q6ZRR7	1453 aa		30.51	■■■□□ 2.48
CDK5RAP2-218	ENST00000491334	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	30.51	■■■□□ 2.47	3e-10	■■■□□ 16.9
CDK5RAP2-218	ENST00000491334	MYOM3	Q5VTT5	1437 aa		30.5	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	SLC26A8	Q96RN1	970 aa		30.47	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	RRP7BP	Q9NSQ0	103 aa		30.47	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	IDI1	Q13907	227 aa		30.46	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	KANK1	Q14678	1352 aa		30.45	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	KIF15	Q9NS87	1388 aa		30.45	■■■□□ 2.47
CDK5RAP2-218	ENST00000491334	RBM33	Q96EV2	1170 aa	Known RBP	30.44	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	ERBIN	Q96RT1	1412 aa		30.42	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	KANK4	Q5T7N3	995 aa	Predicted RBP	30.42	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	SLAIN2	Q9P270	581 aa		30.41	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	PRDM15	P57071	1507 aa	Predicted RBP	30.41	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	PIK3C2B	O00750	1634 aa		30.4	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	BCAN	Q96GW7	911 aa		30.4	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	ROBO1	Q9Y6N7	1651 aa		30.39	■■■□□ 2.46
CDK5RAP2-218	ENST00000491334	EFCAB6	Q5THR3	1501 aa		30.38	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	MSH6	P52701	1360 aa		30.38	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	VPS8	Q8N3P4	1428 aa		30.36	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	JCAD	Q9P266	1359 aa		30.35	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	TET3	O43151	1660 aa		30.35	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	MAP3K1	Q13233	1512 aa		30.34	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	KDM5A	P29375	1690 aa	Known RBP	30.33	■■■□□ 2.45
CDK5RAP2-218	ENST00000491334	ABCC5	O15440	1437 aa		30.32	■■■□□ 2.44
CDK5RAP2-218	ENST00000491334	SLC52A1	Q9NWF4	448 aa		30.32	■■■□□ 2.44
CDK5RAP2-218	ENST00000491334	NKTR	P30414	1462 aa	Known RBP	30.31	■■■□□ 2.44
CDK5RAP2-218	ENST00000491334	HDGF	P51858	240 aa	Known RBP	30.28	■■■□□ 2.44
CDK5RAP2-218	ENST00000491334	LMTK2	Q8IWU2	1503 aa		30.25	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	ZNF772	Q68DY9	489 aa	Predicted RBP	30.24	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	NOS1	P29475	1434 aa		30.23	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	PHLPP1	O60346	1717 aa		30.23	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	MEX3C	Q5U5Q3	659 aa	Known RBP	30.23	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	ANKRD30A	Q9BXX3	1397 aa		30.23	■■■□□ 2.43
CDK5RAP2-218	ENST00000491334	SPATA31A6	Q5VVP1	1343 aa		30.22	■■■□□ 2.43

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms