RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL17A1-207ENST00000488320 KIAA1107Q9UPP5 1409 aa15.16■□□□□ 0.02
COL17A1-207ENST00000488320 CCNB3Q8WWL7 1395 aa15.14■□□□□ 0.01
COL17A1-207ENST00000488320 ADGBQ8N7X0 1667 aa15.14■□□□□ 0.01
COL17A1-207ENST00000488320 NEURL4Q96JN8 1562 aa15.14■□□□□ 0.01
COL17A1-207ENST00000488320 INO80Q9ULG1 1556 aaPredicted RBP15.14■□□□□ 0.01
COL17A1-207ENST00000488320 KIF3BO15066 747 aa15.13■□□□□ 0.01
COL17A1-207ENST00000488320 WASHC2CQ9Y4E1 1318 aa15.13■□□□□ 0.01
COL17A1-207ENST00000488320 NPHP4O75161 1426 aaPredicted RBP15.11■□□□□ 0.01
COL17A1-207ENST00000488320 VWDEQ8N2E2 1590 aa15.11■□□□□ 0.01
COL17A1-207ENST00000488320 DHX29Q7Z478 1369 aaKnown RBP15.1■□□□□ 0.01
COL17A1-207ENST00000488320 FAM135AQ9P2D6 1515 aa15.09■□□□□ 0.01
COL17A1-207ENST00000488320 RGS17Q9UGC6 210 aaPredicted RBP15.09■□□□□ 0.01
COL17A1-207ENST00000488320 ALKQ9UM73 1620 aa15.08■□□□□ 0
COL17A1-207ENST00000488320 ZNF644Q9H582 1327 aaPredicted RBP15.08■□□□□ 0
COL17A1-207ENST00000488320 MIA2Q96PC5 1412 aa15.08■□□□□ 0
COL17A1-207ENST00000488320 FYCO1Q9BQS8 1478 aa15.08■□□□□ 0
COL17A1-207ENST00000488320 UGGT1Q9NYU2 1555 aa15.07■□□□□ 0
COL17A1-207ENST00000488320 PZPP20742 1482 aa15.07■□□□□ 0
COL17A1-207ENST00000488320 MTUS2Q5JR59 1369 aa15.06■□□□□ 0
COL17A1-207ENST00000488320 MED14O60244 1454 aa15.06■□□□□ 0
COL17A1-207ENST00000488320 LRRC7Q96NW7 1537 aa15.06■□□□□ 0
COL17A1-207ENST00000488320 RTEL1-TNFRSF6BF6WH68 1400 aa15.05■□□□□ -0
COL17A1-207ENST00000488320 DEPDC5O75140 1603 aa15.05■□□□□ -0
COL17A1-207ENST00000488320 IQGAP1P46940 1657 aa15.04■□□□□ -0
COL17A1-207ENST00000488320 KDM5DQ9BY66 1539 aa15.04■□□□□ -0
COL17A1-207ENST00000488320 NLRP1Q9C000 1473 aa15.04■□□□□ -0
COL17A1-207ENST00000488320 STRCP1A6NGW2 1772 aa15.03■□□□□ -0
COL17A1-207ENST00000488320 RNF17Q9BXT8 1623 aaKnown RBP15.03■□□□□ -0
COL17A1-207ENST00000488320 POTEAQ6S8J7 498 aa15.02■□□□□ -0
COL17A1-207ENST00000488320 MBD5Q9P267 1494 aa15.01□□□□□ -0.01
COL17A1-207ENST00000488320 SYNMO15061 1565 aa14.99□□□□□ -0.01
COL17A1-207ENST00000488320 RSPH4AQ5TD94 716 aa14.98□□□□□ -0.01
COL17A1-207ENST00000488320 TSPY4P0CV99 314 aa14.97□□□□□ -0.01
COL17A1-207ENST00000488320 TSPY10P0CW01 314 aa14.97□□□□□ -0.01
COL17A1-207ENST00000488320 CFAP65Q6ZU64 1925 aaKnown RBP14.96□□□□□ -0.01
COL17A1-207ENST00000488320 TXNDC2Q86VQ3 553 aa14.96□□□□□ -0.01
COL17A1-207ENST00000488320 TIAM1Q13009 1591 aa14.95□□□□□ -0.02
COL17A1-207ENST00000488320 CCDC141Q6ZP82 1450 aa14.95□□□□□ -0.02
COL17A1-207ENST00000488320 EID1Q9Y6B2 187 aa14.94□□□□□ -0.02
COL17A1-207ENST00000488320 FAM135BQ49AJ0 1406 aa14.92□□□□□ -0.02
COL17A1-207ENST00000488320 LTKP29376 864 aa14.92□□□□□ -0.02
COL17A1-207ENST00000488320 ZC3H13Q5T200 1668 aaKnown RBP14.91□□□□□ -0.02
COL17A1-207ENST00000488320 SCAF11Q99590 1463 aaKnown RBP14.91□□□□□ -0.02
COL17A1-207ENST00000488320 XIRP1Q702N8 1843 aaKnown RBP14.9□□□□□ -0.02
COL17A1-207ENST00000488320 EHBP1L1Q8N3D4 1523 aa14.89□□□□□ -0.03
COL17A1-207ENST00000488320 STAG3Q9UJ98 1225 aa14.89□□□□□ -0.03
COL17A1-207ENST00000488320 CEP162Q5TB80 1403 aa14.89□□□□□ -0.03
COL17A1-207ENST00000488320 ERVK-7P63135 1459 aa14.89□□□□□ -0.03
COL17A1-207ENST00000488320 CAMSAP2Q08AD1 1489 aa14.89□□□□□ -0.03
COL17A1-207ENST00000488320 PROSER2Q86WR7 435 aaPredicted RBP14.88□□□□□ -0.03
COL17A1-207ENST00000488320 UBR1Q8IWV7 1749 aa14.88□□□□□ -0.03
COL17A1-207ENST00000488320 ABCC3O15438 1527 aa14.87□□□□□ -0.03
COL17A1-207ENST00000488320 SETD1AO15047 1707 aaKnown RBP14.87□□□□□ -0.03
COL17A1-207ENST00000488320 RBM33Q96EV2 1170 aaKnown RBP14.87□□□□□ -0.03
COL17A1-207ENST00000488320 TMEM94Q12767 1356 aa14.86□□□□□ -0.03
COL17A1-207ENST00000488320 ROBO1Q9Y6N7 1651 aa14.85□□□□□ -0.03
COL17A1-207ENST00000488320 KCNA6P17658 529 aa14.85□□□□□ -0.03
COL17A1-207ENST00000488320 NCOA2Q15596 1464 aa14.83□□□□□ -0.03
COL17A1-207ENST00000488320 MEX3CQ5U5Q3 659 aaKnown RBP14.83□□□□□ -0.04
COL17A1-207ENST00000488320 UPF1Q92900 1129 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL17A1-207ENST00000488320 TRIM52Q96A61 297 aa14.83□□□□□ -0.04
COL17A1-207ENST00000488320 BCANQ96GW7 911 aa14.83□□□□□ -0.04
COL17A1-207ENST00000488320 CEP152O94986 1710 aa14.83□□□□□ -0.04
COL17A1-207ENST00000488320 ARHGAP23Q9P227 1491 aa14.82□□□□□ -0.04
COL17A1-207ENST00000488320 SLIT1O75093 1534 aa14.82□□□□□ -0.04
COL17A1-207ENST00000488320 SLC26A8Q96RN1 970 aa14.82□□□□□ -0.04
COL17A1-207ENST00000488320 ARHGEF5Q12774 1597 aa14.81□□□□□ -0.04
COL17A1-207ENST00000488320 SLAIN2Q9P270 581 aa14.81□□□□□ -0.04
COL17A1-207ENST00000488320 JCADQ9P266 1359 aa14.81□□□□□ -0.04
COL17A1-207ENST00000488320 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL17A1-207ENST00000488320 LRRC9Q6ZRR7 1453 aa14.8□□□□□ -0.04
COL17A1-207ENST00000488320 PHLPP1O60346 1717 aa14.8□□□□□ -0.04
COL17A1-207ENST00000488320 MSH6P52701 1360 aa14.79□□□□□ -0.04
COL17A1-207ENST00000488320 ZNF772Q68DY9 489 aaPredicted RBP14.79□□□□□ -0.04
COL17A1-207ENST00000488320 TMEM2Q9UHN6 1383 aa14.79□□□□□ -0.04
COL17A1-207ENST00000488320 EIF2AK4Q9P2K8 1649 aaKnown RBP14.78□□□□□ -0.04
COL17A1-207ENST00000488320 PIK3C2BO00750 1634 aa14.76□□□□□ -0.05
COL17A1-207ENST00000488320 RXRBP28702 533 aa14.75□□□□□ -0.05
COL17A1-207ENST00000488320 IDI1Q13907 227 aa14.75□□□□□ -0.05
COL17A1-207ENST00000488320 MROH1Q8NDA8 1641 aa14.74□□□□□ -0.05
COL17A1-207ENST00000488320 MAST1Q9Y2H9 1570 aa14.74□□□□□ -0.05
COL17A1-207ENST00000488320 PRDM15P57071 1507 aaPredicted RBP14.74□□□□□ -0.05
COL17A1-207ENST00000488320 MAP3K1Q13233 1512 aa14.74□□□□□ -0.05
COL17A1-207ENST00000488320 ARHGAP31Q2M1Z3 1444 aa14.74□□□□□ -0.05
COL17A1-207ENST00000488320 SPATA31A6Q5VVP1 1343 aa14.73□□□□□ -0.05
COL17A1-207ENST00000488320 C14orf37Q86TY3 774 aa14.73□□□□□ -0.05
COL17A1-207ENST00000488320 DUOX2Q9NRD8 1548 aa14.72□□□□□ -0.05
COL17A1-207ENST00000488320 RRP7BPQ9NSQ0 103 aa14.72□□□□□ -0.05
COL17A1-207ENST00000488320 KANK1Q14678 1352 aa14.72□□□□□ -0.05
COL17A1-207ENST00000488320 EFCAB6Q5THR3 1501 aa14.71□□□□□ -0.05
COL17A1-207ENST00000488320 TET3O43151 1660 aa14.7□□□□□ -0.06
COL17A1-207ENST00000488320 NKTRP30414 1462 aaKnown RBP14.69□□□□□ -0.06
COL17A1-207ENST00000488320 NUTM2BA6NNL0 878 aaPredicted RBP14.69□□□□□ -0.06
COL17A1-207ENST00000488320 NUTM2EB1AL46 878 aaPredicted RBP14.69□□□□□ -0.06
COL17A1-207ENST00000488320 NUTM2AQ8IVF1 878 aaPredicted RBP14.69□□□□□ -0.06
COL17A1-207ENST00000488320 LRP6O75581 1613 aa14.68□□□□□ -0.06
COL17A1-207ENST00000488320 PPP1R15AO75807 674 aaPredicted RBP14.68□□□□□ -0.06
COL17A1-207ENST00000488320 KIF15Q9NS87 1388 aa14.68□□□□□ -0.06
COL17A1-207ENST00000488320 HDGFP51858 240 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms