RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 ADGBQ8N7X0 1667 aa17.07■□□□□ 0.32
HMGN1-215ENST00000485550 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
HMGN1-215ENST00000485550 A2ML1A8K2U0 1454 aa17.04■□□□□ 0.32
HMGN1-215ENST00000485550 NEURL4Q96JN8 1562 aa17.03■□□□□ 0.32
HMGN1-215ENST00000485550 FYCO1Q9BQS8 1478 aa17.01■□□□□ 0.31
HMGN1-215ENST00000485550 TOM1O60784 492 aa17.01■□□□□ 0.31
HMGN1-215ENST00000485550 CPS1P31327 1500 aa17.01■□□□□ 0.31
HMGN1-215ENST00000485550 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
HMGN1-215ENST00000485550 KIAA1107Q9UPP5 1409 aa17■□□□□ 0.31
HMGN1-215ENST00000485550 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
HMGN1-215ENST00000485550 SHANK2Q9UPX8 1470 aa16.99■□□□□ 0.31
HMGN1-215ENST00000485550 CCNB3Q8WWL7 1395 aa16.97■□□□□ 0.31
HMGN1-215ENST00000485550 ALKQ9UM73 1620 aa16.96■□□□□ 0.31
HMGN1-215ENST00000485550 FBXO31Q5XUX0 539 aaPredicted RBP16.96■□□□□ 0.31
HMGN1-215ENST00000485550 VWDEQ8N2E2 1590 aa16.95■□□□□ 0.3
HMGN1-215ENST00000485550 STRCP1A6NGW2 1772 aa16.94■□□□□ 0.3
HMGN1-215ENST00000485550 TNRQ92752 1358 aa16.94■□□□□ 0.3
HMGN1-215ENST00000485550 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
HMGN1-215ENST00000485550 RNF216Q9NWF9 866 aaPredicted RBP16.94■□□□□ 0.3
HMGN1-215ENST00000485550 ZNF644Q9H582 1327 aaPredicted RBP16.94■□□□□ 0.3
HMGN1-215ENST00000485550 MTUS2Q5JR59 1369 aa16.93■□□□□ 0.3
HMGN1-215ENST00000485550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.93■□□□□ 0.3
HMGN1-215ENST00000485550 CFAP65Q6ZU64 1925 aaKnown RBP16.93■□□□□ 0.3
HMGN1-215ENST00000485550 TIAM1Q13009 1591 aa16.91■□□□□ 0.3
HMGN1-215ENST00000485550 CEP162Q5TB80 1403 aa16.91■□□□□ 0.3
HMGN1-215ENST00000485550 CACNB1Q02641 598 aaPredicted RBP16.91■□□□□ 0.3
HMGN1-215ENST00000485550 IQGAP1P46940 1657 aa16.91■□□□□ 0.3
HMGN1-215ENST00000485550 ANKLE2Q86XL3 938 aa16.9■□□□□ 0.3
HMGN1-215ENST00000485550 PZPP20742 1482 aa16.9■□□□□ 0.3
HMGN1-215ENST00000485550 KDM5DQ9BY66 1539 aa16.9■□□□□ 0.3
HMGN1-215ENST00000485550 DHX29Q7Z478 1369 aaKnown RBP16.89■□□□□ 0.3
HMGN1-215ENST00000485550 DEPDC5O75140 1603 aa16.89■□□□□ 0.29
HMGN1-215ENST00000485550 MBD5Q9P267 1494 aa16.89■□□□□ 0.29
HMGN1-215ENST00000485550 KIF3BO15066 747 aa16.89■□□□□ 0.29
HMGN1-215ENST00000485550 UGGT1Q9NYU2 1555 aa16.89■□□□□ 0.29
HMGN1-215ENST00000485550 NPHP4O75161 1426 aaPredicted RBP16.88■□□□□ 0.29
HMGN1-215ENST00000485550 RTEL1-TNFRSF6BF6WH68 1400 aa16.87■□□□□ 0.29
HMGN1-215ENST00000485550 THEMISQ8N1K5 641 aaPredicted RBP16.86■□□□□ 0.29
HMGN1-215ENST00000485550 MED14O60244 1454 aa16.86■□□□□ 0.29
HMGN1-215ENST00000485550 RNF17Q9BXT8 1623 aaKnown RBP16.85■□□□□ 0.29
HMGN1-215ENST00000485550 WASHC2CQ9Y4E1 1318 aa16.85■□□□□ 0.29
HMGN1-215ENST00000485550 MIA2Q96PC5 1412 aa16.85■□□□□ 0.29
HMGN1-215ENST00000485550 FAM135AQ9P2D6 1515 aa16.85■□□□□ 0.29
HMGN1-215ENST00000485550 NLRP1Q9C000 1473 aa16.84■□□□□ 0.29
HMGN1-215ENST00000485550 SYNMO15061 1565 aa16.83■□□□□ 0.28
HMGN1-215ENST00000485550 LRRC7Q96NW7 1537 aa16.83■□□□□ 0.28
HMGN1-215ENST00000485550 XIRP1Q702N8 1843 aaKnown RBP16.82■□□□□ 0.28
HMGN1-215ENST00000485550 EHBP1L1Q8N3D4 1523 aa16.82■□□□□ 0.28
HMGN1-215ENST00000485550 ZC3H13Q5T200 1668 aaKnown RBP16.81■□□□□ 0.28
HMGN1-215ENST00000485550 CCDC141Q6ZP82 1450 aa16.8■□□□□ 0.28
HMGN1-215ENST00000485550 RGS17Q9UGC6 210 aaPredicted RBP16.79■□□□□ 0.28
HMGN1-215ENST00000485550 CAMSAP2Q08AD1 1489 aa16.79■□□□□ 0.28
HMGN1-215ENST00000485550 CEP152O94986 1710 aa16.78■□□□□ 0.28
HMGN1-215ENST00000485550 UBR1Q8IWV7 1749 aa16.77■□□□□ 0.28
HMGN1-215ENST00000485550 RNF39Q9H2S5 420 aa16.75■□□□□ 0.27
HMGN1-215ENST00000485550 ABCC3O15438 1527 aa16.74■□□□□ 0.27
HMGN1-215ENST00000485550 NCOA2Q15596 1464 aa16.73■□□□□ 0.27
HMGN1-215ENST00000485550 KANK4Q5T7N3 995 aaPredicted RBP16.72■□□□□ 0.27
HMGN1-215ENST00000485550 ERVK-7P63135 1459 aa16.72■□□□□ 0.27
HMGN1-215ENST00000485550 ARHGEF5Q12774 1597 aa16.72■□□□□ 0.27
HMGN1-215ENST00000485550 VPS8Q8N3P4 1428 aa16.7■□□□□ 0.26
HMGN1-215ENST00000485550 RSPH4AQ5TD94 716 aa16.7■□□□□ 0.26
HMGN1-215ENST00000485550 SETD1AO15047 1707 aaKnown RBP16.7■□□□□ 0.26
HMGN1-215ENST00000485550 SCAF11Q99590 1463 aaKnown RBP16.69■□□□□ 0.26
HMGN1-215ENST00000485550 MROH1Q8NDA8 1641 aa16.68■□□□□ 0.26
HMGN1-215ENST00000485550 EIF2AK4Q9P2K8 1649 aaKnown RBP16.68■□□□□ 0.26
HMGN1-215ENST00000485550 TSPY4P0CV99 314 aa16.68■□□□□ 0.26
HMGN1-215ENST00000485550 TSPY10P0CW01 314 aa16.68■□□□□ 0.26
HMGN1-215ENST00000485550 POTEAQ6S8J7 498 aa16.68■□□□□ 0.26
HMGN1-215ENST00000485550 LTKP29376 864 aa16.67■□□□□ 0.26
HMGN1-215ENST00000485550 NCBP3Q53F19 620 aaKnown RBP16.67■□□□□ 0.26
HMGN1-215ENST00000485550 ROBO1Q9Y6N7 1651 aa16.66■□□□□ 0.26
HMGN1-215ENST00000485550 LRRC9Q6ZRR7 1453 aa16.66■□□□□ 0.26
HMGN1-215ENST00000485550 TXNDC2Q86VQ3 553 aa16.65■□□□□ 0.26
HMGN1-215ENST00000485550 MAST1Q9Y2H9 1570 aa16.64■□□□□ 0.25
HMGN1-215ENST00000485550 ARHGAP23Q9P227 1491 aa16.64■□□□□ 0.25
HMGN1-215ENST00000485550 SLIT1O75093 1534 aa16.64■□□□□ 0.25
HMGN1-215ENST00000485550 PIK3C2BO00750 1634 aa16.63■□□□□ 0.25
HMGN1-215ENST00000485550 FAM135BQ49AJ0 1406 aa16.62■□□□□ 0.25
HMGN1-215ENST00000485550 APLP2Q06481 763 aa16.61■□□□□ 0.25
HMGN1-215ENST00000485550 RBM33Q96EV2 1170 aaKnown RBP16.59■□□□□ 0.25
HMGN1-215ENST00000485550 EID1Q9Y6B2 187 aa16.59■□□□□ 0.25
HMGN1-215ENST00000485550 PHLPP1O60346 1717 aa16.59■□□□□ 0.25
HMGN1-215ENST00000485550 TMEM94Q12767 1356 aa16.58■□□□□ 0.24
HMGN1-215ENST00000485550 MAP3K1Q13233 1512 aa16.57■□□□□ 0.24
HMGN1-215ENST00000485550 DUOX2Q9NRD8 1548 aa16.55■□□□□ 0.24
HMGN1-215ENST00000485550 STAG3Q9UJ98 1225 aa16.55■□□□□ 0.24
HMGN1-215ENST00000485550 PRDM15P57071 1507 aaPredicted RBP16.55■□□□□ 0.24
HMGN1-215ENST00000485550 MYOM3Q5VTT5 1437 aa16.54■□□□□ 0.24
HMGN1-215ENST00000485550 TMEM2Q9UHN6 1383 aa16.54■□□□□ 0.24
HMGN1-215ENST00000485550 PROSER2Q86WR7 435 aaPredicted RBP16.54■□□□□ 0.24
HMGN1-215ENST00000485550 ARHGAP31Q2M1Z3 1444 aa16.53■□□□□ 0.24
HMGN1-215ENST00000485550 KCNA6P17658 529 aa16.53■□□□□ 0.24
HMGN1-215ENST00000485550 SLC26A8Q96RN1 970 aa16.53■□□□□ 0.24
HMGN1-215ENST00000485550 CROCC2H7BZ55 1655 aa16.53■□□□□ 0.24
HMGN1-215ENST00000485550 KDM5AP29375 1690 aaKnown RBP16.53■□□□□ 0.24
HMGN1-215ENST00000485550 EFCAB6Q5THR3 1501 aa16.52■□□□□ 0.24
HMGN1-215ENST00000485550 MYO5BQ9ULV0 1848 aa16.52■□□□□ 0.23
HMGN1-215ENST00000485550 TET3O43151 1660 aa16.51■□□□□ 0.23
HMGN1-215ENST00000485550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.51■□□□□ 0.231e-6■■□□□ 12.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms