RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 METRNQ9UJH8 293 aa12.23□□□□□ -0.45
LSM5-210ENST00000480956 IER5LQ5T953 404 aa12.23□□□□□ -0.45
LSM5-210ENST00000480956 DPY19L2Q6NUT2 758 aa12.23□□□□□ -0.45
LSM5-210ENST00000480956 POTEB2H3BUK9 544 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 SOX12O15370 315 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 PDE4AP27815 886 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 CCDC27Q2M243 656 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 SLC39A7Q92504 469 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 CCDC102AQ96A19 550 aa12.22□□□□□ -0.45
LSM5-210ENST00000480956 MFSD10Q14728 455 aa12.21□□□□□ -0.45
LSM5-210ENST00000480956 C7P10643 843 aa12.2□□□□□ -0.46
LSM5-210ENST00000480956 BRD1O95696 1058 aa12.19□□□□□ -0.46
LSM5-210ENST00000480956 GOLGA2Q08379 1002 aa12.19□□□□□ -0.46
LSM5-210ENST00000480956 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.19□□□□□ -0.464e-7■□□□□ 10.5
LSM5-210ENST00000480956 POTEJP0CG39 1038 aa12.18□□□□□ -0.46
LSM5-210ENST00000480956 MAP2K5Q13163 448 aa12.18□□□□□ -0.46
LSM5-210ENST00000480956 DDX27Q96GQ7 796 aaKnown RBP12.18□□□□□ -0.46
LSM5-210ENST00000480956 POLR3GLQ9BT43 218 aa12.18□□□□□ -0.46
LSM5-210ENST00000480956 GPR37O15354 613 aa12.17□□□□□ -0.46
LSM5-210ENST00000480956 CAMK2BQ13554 666 aa12.17□□□□□ -0.46
LSM5-210ENST00000480956 OCEL1Q9H607 264 aa12.16□□□□□ -0.46
LSM5-210ENST00000480956 ZNF330Q9Y3S2 320 aaPredicted RBP12.16□□□□□ -0.46
LSM5-210ENST00000480956 IRF6O14896 467 aa12.14□□□□□ -0.47
LSM5-210ENST00000480956 TTLL12Q14166 644 aaPredicted RBP12.14□□□□□ -0.47
LSM5-210ENST00000480956 NLRP6P59044 892 aa12.14□□□□□ -0.47
LSM5-210ENST00000480956 CCDC125Q86Z20 511 aa12.12□□□□□ -0.47
LSM5-210ENST00000480956 COG6Q9Y2V7 657 aa12.12□□□□□ -0.47
LSM5-210ENST00000480956 PPM1GO15355 546 aaPredicted RBP12.11□□□□□ -0.47
LSM5-210ENST00000480956 SH3D19Q5HYK7 790 aa12.11□□□□□ -0.47
LSM5-210ENST00000480956 SEC24BO95487 1268 aa12.09□□□□□ -0.47
LSM5-210ENST00000480956 PLCG2P16885 1265 aa12.08□□□□□ -0.47
LSM5-210ENST00000480956 CRISPLD2Q9H0B8 497 aa12.08□□□□□ -0.47
LSM5-210ENST00000480956 BRD2P25440 801 aaKnown RBP12.08□□□□□ -0.48
LSM5-210ENST00000480956 SND1Q7KZF4 910 aaKnown RBP eCLIP12.07□□□□□ -0.48
LSM5-210ENST00000480956 USTQ9Y2C2 406 aa12.07□□□□□ -0.48
LSM5-210ENST00000480956 SPDYE5A6NIY4 337 aa12.06□□□□□ -0.48
LSM5-210ENST00000480956 DHX37Q8IY37 1157 aaKnown RBP12.06□□□□□ -0.48
LSM5-210ENST00000480956 UNCXA6NJT0 531 aa12.06□□□□□ -0.48
LSM5-210ENST00000480956 MS4A1P11836 297 aa12.06□□□□□ -0.48
LSM5-210ENST00000480956 IGSF5Q9NSI5 407 aa12.06□□□□□ -0.48
LSM5-210ENST00000480956 GIGYF2Q6Y7W6 1299 aaKnown RBP12.05□□□□□ -0.48
LSM5-210ENST00000480956 CANXP27824 592 aaKnown RBP12.04□□□□□ -0.48
LSM5-210ENST00000480956 CALR3Q96L12 384 aaKnown RBP12.04□□□□□ -0.48
LSM5-210ENST00000480956 TMEM121BQ9BXQ6 578 aaPredicted RBP12.04□□□□□ -0.48
LSM5-210ENST00000480956 IVNS1ABPQ9Y6Y0 642 aa12.04□□□□□ -0.48
LSM5-210ENST00000480956 ATP1B4Q9UN42 357 aaPredicted RBP12.01□□□□□ -0.49
LSM5-210ENST00000480956 SKIV2LQ15477 1246 aaKnown RBP12□□□□□ -0.49
LSM5-210ENST00000480956 MICALL2Q8IY33 904 aa12□□□□□ -0.49
LSM5-210ENST00000480956 CSB-PGBD3P0DP91 1061 aa12□□□□□ -0.49
LSM5-210ENST00000480956 PBXIP1Q96AQ6 731 aa12□□□□□ -0.49
LSM5-210ENST00000480956 NUTM2FA1L443 756 aa11.99□□□□□ -0.49
LSM5-210ENST00000480956 SPDYE16A6NNV3 312 aaPredicted RBP11.99□□□□□ -0.49
LSM5-210ENST00000480956 BOLA1Q9Y3E2 137 aa11.99□□□□□ -0.49
LSM5-210ENST00000480956 GNPATO15228 680 aa11.98□□□□□ -0.49
LSM5-210ENST00000480956 OXER1Q8TDS5 423 aa11.98□□□□□ -0.49
LSM5-210ENST00000480956 TMEM92Q6UXU6 159 aa11.97□□□□□ -0.49
LSM5-210ENST00000480956 WWC1Q8IX03 1113 aa11.97□□□□□ -0.49
LSM5-210ENST00000480956 RBM47A0AV96 593 aaKnown RBP11.96□□□□□ -0.49
LSM5-210ENST00000480956 PDIA6Q15084 440 aa11.96□□□□□ -0.49
LSM5-210ENST00000480956 DPYSL4O14531 572 aa11.94□□□□□ -0.5
LSM5-210ENST00000480956 LHX8Q68G74 356 aa11.94□□□□□ -0.5
LSM5-210ENST00000480956 GLMNQ92990 594 aa11.94□□□□□ -0.5
LSM5-210ENST00000480956 OTUD5Q96G74 571 aa11.94□□□□□ -0.5
LSM5-210ENST00000480956 L3MBTL3Q96JM7 780 aaPredicted RBP11.92□□□□□ -0.5
LSM5-210ENST00000480956 PROCA1Q8NCQ7 364 aaPredicted RBP11.91□□□□□ -0.5
LSM5-210ENST00000480956 CWC22Q9HCG8 908 aaKnown RBP11.91□□□□□ -0.5
LSM5-210ENST00000480956 HIC1Q14526 733 aa11.91□□□□□ -0.5
LSM5-210ENST00000480956 BANK1Q8NDB2 785 aa11.91□□□□□ -0.5
LSM5-210ENST00000480956 SNRKQ9NRH2 765 aa11.91□□□□□ -0.5
LSM5-210ENST00000480956 TBC1D12O60347 775 aa11.89□□□□□ -0.51
LSM5-210ENST00000480956 FECHP22830 423 aa11.89□□□□□ -0.51
LSM5-210ENST00000480956 REPIN1Q9BWE0 567 aaKnown RBP11.89□□□□□ -0.51
LSM5-210ENST00000480956 MRRFQ96E11 262 aaKnown RBP11.89□□□□□ -0.51
LSM5-210ENST00000480956 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.88□□□□□ -0.51
LSM5-210ENST00000480956 CARNS1A5YM72 827 aa11.87□□□□□ -0.51
LSM5-210ENST00000480956 SMARCA5O60264 1052 aaPredicted RBP11.87□□□□□ -0.51
LSM5-210ENST00000480956 PPP1R15BQ5SWA1 713 aa11.87□□□□□ -0.51
LSM5-210ENST00000480956 GDPD2Q9HCC8 539 aa11.87□□□□□ -0.51
LSM5-210ENST00000480956 KIF3CO14782 793 aa11.86□□□□□ -0.51
LSM5-210ENST00000480956 FAM9AQ8IZU1 332 aaPredicted RBP11.86□□□□□ -0.51
LSM5-210ENST00000480956 SPATA32Q96LK8 384 aa11.86□□□□□ -0.51
LSM5-210ENST00000480956 DRC1Q96MC2 740 aa11.86□□□□□ -0.51
LSM5-210ENST00000480956 KIAA1522Q9P206 1035 aaPredicted RBP11.86□□□□□ -0.51
LSM5-210ENST00000480956 FCHSD2O94868 740 aa11.86□□□□□ -0.51
LSM5-210ENST00000480956 RFX1P22670 979 aa11.85□□□□□ -0.51
LSM5-210ENST00000480956 POLR3EQ9NVU0 708 aa11.85□□□□□ -0.51
LSM5-210ENST00000480956 POM121CA8CG34 1229 aa11.84□□□□□ -0.51
LSM5-210ENST00000480956 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.84□□□□□ -0.51
LSM5-210ENST00000480956 VRTNQ9H8Y1 702 aa11.83□□□□□ -0.52
LSM5-210ENST00000480956 UBE2Q2Q8WVN8 375 aa11.83□□□□□ -0.52
LSM5-210ENST00000480956 ARID4BQ4LE39 1312 aaPredicted RBP11.82□□□□□ -0.52
LSM5-210ENST00000480956 GRXCR2A6NFK2 248 aa11.82□□□□□ -0.52
LSM5-210ENST00000480956 NCLP19338 710 aaKnown RBP11.82□□□□□ -0.52
LSM5-210ENST00000480956 EMILIN3Q9NT22 766 aa11.82□□□□□ -0.52
LSM5-210ENST00000480956 SREK1Q8WXA9 508 aaKnown RBP11.81□□□□□ -0.52
LSM5-210ENST00000480956 C2orf72A6NCS6 295 aa11.8□□□□□ -0.52
LSM5-210ENST00000480956 ABL2P42684 1182 aa11.8□□□□□ -0.52
LSM5-210ENST00000480956 CLCN1P35523 988 aa11.8□□□□□ -0.52
LSM5-210ENST00000480956 RFC5P40937 340 aa11.8□□□□□ -0.52
LSM5-210ENST00000480956 ANKRD13AQ8IZ07 590 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms