RNA–Protein interactions for RNA: ENST00000469558.1

MCF2L-222, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-222ENST00000469558 KDM5DQ9BY66 1539 aa18.06■□□□□ 0.48
MCF2L-222ENST00000469558 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
MCF2L-222ENST00000469558 ERBINQ96RT1 1412 aa18.05■□□□□ 0.48
MCF2L-222ENST00000469558 DEPDC5O75140 1603 aa18.05■□□□□ 0.48
MCF2L-222ENST00000469558 ZMYM3Q14202 1370 aa18.04■□□□□ 0.48
MCF2L-222ENST00000469558 FAM50AQ14320 339 aaKnown RBP18.04■□□□□ 0.48
MCF2L-222ENST00000469558 RRBP1Q9P2E9 1410 aaKnown RBP18.04■□□□□ 0.48
MCF2L-222ENST00000469558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.04■□□□□ 0.48
MCF2L-222ENST00000469558 PRDM15P57071 1507 aaPredicted RBP18.03■□□□□ 0.48
MCF2L-222ENST00000469558 ABCC3O15438 1527 aa18.03■□□□□ 0.48
MCF2L-222ENST00000469558 RRP7BPQ9NSQ0 103 aa18.02■□□□□ 0.48
MCF2L-222ENST00000469558 CHIC2Q9UKJ5 165 aa18.02■□□□□ 0.48
MCF2L-222ENST00000469558 PPP6R1Q9UPN7 881 aa18.02■□□□□ 0.48
MCF2L-222ENST00000469558 NPATQ14207 1427 aa18.01■□□□□ 0.47
MCF2L-222ENST00000469558 ANKRD30AQ9BXX3 1397 aa18.01■□□□□ 0.47
MCF2L-222ENST00000469558 ZC3H13Q5T200 1668 aaKnown RBP18■□□□□ 0.47
MCF2L-222ENST00000469558 CEP152O94986 1710 aa17.99■□□□□ 0.47
MCF2L-222ENST00000469558 VWDEQ8N2E2 1590 aa17.99■□□□□ 0.47
MCF2L-222ENST00000469558 ESF1Q9H501 851 aaKnown RBP17.98■□□□□ 0.47
MCF2L-222ENST00000469558 SETD1BQ9UPS6 1966 aaKnown RBP17.98■□□□□ 0.47
MCF2L-222ENST00000469558 MYO3AQ8NEV4 1616 aa17.98■□□□□ 0.47
MCF2L-222ENST00000469558 PZPP20742 1482 aa17.97■□□□□ 0.47
MCF2L-222ENST00000469558 ROCK1Q13464 1354 aa17.96■□□□□ 0.47
MCF2L-222ENST00000469558 ZNF142P52746 1687 aaPredicted RBP17.96■□□□□ 0.47
MCF2L-222ENST00000469558 CAMSAP1Q5T5Y3 1602 aa17.95■□□□□ 0.46
MCF2L-222ENST00000469558 HSPA2P54652 639 aa17.95■□□□□ 0.46
MCF2L-222ENST00000469558 UHRF1BP1Q6BDS2 1440 aa17.95■□□□□ 0.46
MCF2L-222ENST00000469558 ANKRD50Q9ULJ7 1429 aa17.93■□□□□ 0.46
MCF2L-222ENST00000469558 WASHC2CQ9Y4E1 1318 aa17.93■□□□□ 0.46
MCF2L-222ENST00000469558 FBXO31Q5XUX0 539 aaPredicted RBP17.92■□□□□ 0.46
MCF2L-222ENST00000469558 LMTK2Q8IWU2 1503 aa17.92■□□□□ 0.46
MCF2L-222ENST00000469558 UNC13BO14795 1591 aa17.91■□□□□ 0.46
MCF2L-222ENST00000469558 SPATA31D1Q6ZQQ2 1576 aa17.91■□□□□ 0.46
MCF2L-222ENST00000469558 STRCQ7RTU9 1775 aa17.91■□□□□ 0.46
MCF2L-222ENST00000469558 CEP170BQ9Y4F5 1589 aaPredicted RBP17.91■□□□□ 0.46
MCF2L-222ENST00000469558 ARHGAP31Q2M1Z3 1444 aa17.89■□□□□ 0.45
MCF2L-222ENST00000469558 ERVK-7P63135 1459 aa17.88■□□□□ 0.45
MCF2L-222ENST00000469558 ITGAEP38570 1179 aa17.87■□□□□ 0.45
MCF2L-222ENST00000469558 EFCAB6Q5THR3 1501 aa17.87■□□□□ 0.45
MCF2L-222ENST00000469558 TNRQ92752 1358 aa17.86■□□□□ 0.45
MCF2L-222ENST00000469558 A2ML1A8K2U0 1454 aa17.85■□□□□ 0.45
MCF2L-222ENST00000469558 GCC2Q8IWJ2 1684 aa17.85■□□□□ 0.45
MCF2L-222ENST00000469558 NAIPQ13075 1403 aa17.83■□□□□ 0.45
MCF2L-222ENST00000469558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.83■□□□□ 0.443e-6■■□□□ 13.8
MCF2L-222ENST00000469558 IQGAP3Q86VI3 1631 aa17.83■□□□□ 0.44
MCF2L-222ENST00000469558 TET3O43151 1660 aa17.82■□□□□ 0.44
MCF2L-222ENST00000469558 SYNMO15061 1565 aa17.81■□□□□ 0.44
MCF2L-222ENST00000469558 NLRP1Q9C000 1473 aa17.81■□□□□ 0.44
MCF2L-222ENST00000469558 KANK1Q14678 1352 aa17.8■□□□□ 0.44
MCF2L-222ENST00000469558 PLA2R1Q13018 1463 aa17.8■□□□□ 0.44
MCF2L-222ENST00000469558 CFAP65Q6ZU64 1925 aaKnown RBP17.8■□□□□ 0.44
MCF2L-222ENST00000469558 HFM1A2PYH4 1435 aa17.79■□□□□ 0.44
MCF2L-222ENST00000469558 NOS1P29475 1434 aa17.78■□□□□ 0.44
MCF2L-222ENST00000469558 E9PCH4 1651 aa17.77■□□□□ 0.43
MCF2L-222ENST00000469558 UBR1Q8IWV7 1749 aa17.76■□□□□ 0.43
MCF2L-222ENST00000469558 NEURL4Q96JN8 1562 aa17.76■□□□□ 0.43
MCF2L-222ENST00000469558 RPRD2Q5VT52 1461 aaKnown RBP17.75■□□□□ 0.43
MCF2L-222ENST00000469558 UGGT1Q9NYU2 1555 aa17.75■□□□□ 0.43
MCF2L-222ENST00000469558 PIK3C2BO00750 1634 aa17.74■□□□□ 0.43
MCF2L-222ENST00000469558 PTPRTO14522 1441 aa17.73■□□□□ 0.43
MCF2L-222ENST00000469558 POLR1AO95602 1720 aaPredicted RBP17.72■□□□□ 0.43
MCF2L-222ENST00000469558 NUP155O75694 1391 aa17.71■□□□□ 0.43
MCF2L-222ENST00000469558 NCKAP5LQ9HCH0 1330 aa17.71■□□□□ 0.42
MCF2L-222ENST00000469558 KDM5AP29375 1690 aaKnown RBP17.7■□□□□ 0.42
MCF2L-222ENST00000469558 ARHGAP23Q9P227 1491 aa17.69■□□□□ 0.42
MCF2L-222ENST00000469558 SLIT1O75093 1534 aa17.67■□□□□ 0.42
MCF2L-222ENST00000469558 ADGRB3O60242 1522 aa17.67■□□□□ 0.42
MCF2L-222ENST00000469558 PKD2Q13563 968 aa17.66■□□□□ 0.42
MCF2L-222ENST00000469558 IDI1Q13907 227 aa17.66■□□□□ 0.42
MCF2L-222ENST00000469558 MED14O60244 1454 aa17.65■□□□□ 0.42
MCF2L-222ENST00000469558 LTBP4Q8N2S1 1624 aa17.65■□□□□ 0.42
MCF2L-222ENST00000469558 THEMISQ8N1K5 641 aaPredicted RBP17.64■□□□□ 0.41
MCF2L-222ENST00000469558 DMRT2Q9Y5R5 561 aa17.64■□□□□ 0.41
MCF2L-222ENST00000469558 TMEM131LA2VDJ0 1609 aa17.63■□□□□ 0.41
MCF2L-222ENST00000469558 SPHKAPQ2M3C7 1700 aa17.63■□□□□ 0.41
MCF2L-222ENST00000469558 MYO5BQ9ULV0 1848 aa17.63■□□□□ 0.41
MCF2L-222ENST00000469558 IQGAP1P46940 1657 aa17.61■□□□□ 0.41
MCF2L-222ENST00000469558 TMEM2Q9UHN6 1383 aa17.6■□□□□ 0.41
MCF2L-222ENST00000469558 SCAF11Q99590 1463 aaKnown RBP17.59■□□□□ 0.41
MCF2L-222ENST00000469558 NPHP4O75161 1426 aaPredicted RBP17.59■□□□□ 0.41
MCF2L-222ENST00000469558 LTKP29376 864 aa17.59■□□□□ 0.41
MCF2L-222ENST00000469558 SLC52A1Q9NWF4 448 aa17.59■□□□□ 0.41
MCF2L-222ENST00000469558 TRPM2O94759 1503 aa17.58■□□□□ 0.41
MCF2L-222ENST00000469558 ZFYVE9O95405 1425 aa17.58■□□□□ 0.41
MCF2L-222ENST00000469558 CLTCL1P53675 1640 aa17.58■□□□□ 0.4
MCF2L-222ENST00000469558 ANKLE2Q86XL3 938 aa17.57■□□□□ 0.4
MCF2L-222ENST00000469558 SETD5Q9C0A6 1442 aa17.56■□□□□ 0.4
MCF2L-222ENST00000469558 ZNF335Q9H4Z2 1342 aaPredicted RBP17.56■□□□□ 0.4
MCF2L-222ENST00000469558 STRCP1A6NGW2 1772 aa17.53■□□□□ 0.4
MCF2L-222ENST00000469558 RAB3GAP2Q9H2M9 1393 aa17.53■□□□□ 0.4
MCF2L-222ENST00000469558 CERKQ8TCT0 537 aa17.52■□□□□ 0.4
MCF2L-222ENST00000469558 TRIM52Q96A61 297 aa17.52■□□□□ 0.4
MCF2L-222ENST00000469558 RIMS2Q9UQ26 1411 aa17.5■□□□□ 0.39
MCF2L-222ENST00000469558 TXNDC2Q86VQ3 553 aa17.5■□□□□ 0.39
MCF2L-222ENST00000469558 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
MCF2L-222ENST00000469558 FOXD1Q16676 465 aa17.48■□□□□ 0.39
MCF2L-222ENST00000469558 ILDR1Q86SU0 546 aaPredicted RBP17.48■□□□□ 0.39
MCF2L-222ENST00000469558 STAG3Q9UJ98 1225 aa17.48■□□□□ 0.39
MCF2L-222ENST00000469558 IQSEC2Q5JU85 1478 aa17.47■□□□□ 0.39
MCF2L-222ENST00000469558 MPHOSPH9Q99550 1183 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms