RNA–Protein interactions for RNA: ENST00000468402.1

HMGB1P25-201, Transcript of high mobility group box 1 pseudogene 25, humanhuman

BASIC

Gene HMGB1P25, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P25-201ENST00000468402 PBX2P40425 430 aa6.84□□□□□ -1.31
HMGB1P25-201ENST00000468402 KCNH8Q96L42 1107 aa6.84□□□□□ -1.31
HMGB1P25-201ENST00000468402 RSPH6AQ9H0K4 717 aa6.83□□□□□ -1.32
HMGB1P25-201ENST00000468402 GPHNQ9NQX3 736 aaPredicted RBP6.83□□□□□ -1.32
HMGB1P25-201ENST00000468402 NUTM2FA1L443 756 aa6.82□□□□□ -1.32
HMGB1P25-201ENST00000468402 SPDYE16A6NNV3 312 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P25-201ENST00000468402 ARID3AQ99856 593 aa6.81□□□□□ -1.32
HMGB1P25-201ENST00000468402 LHX6Q9UPM6 363 aa6.81□□□□□ -1.32
HMGB1P25-201ENST00000468402 GRXCR2A6NFK2 248 aa6.8□□□□□ -1.32
HMGB1P25-201ENST00000468402 KCTD12Q96CX2 325 aaKnown RBP6.8□□□□□ -1.32
HMGB1P25-201ENST00000468402 PODXL2Q9NZ53 605 aa6.8□□□□□ -1.32
HMGB1P25-201ENST00000468402 UBTFP17480 764 aaKnown RBP6.79□□□□□ -1.32
HMGB1P25-201ENST00000468402 EMILIN3Q9NT22 766 aa6.79□□□□□ -1.32
HMGB1P25-201ENST00000468402 C2orf72A6NCS6 295 aa6.78□□□□□ -1.32
HMGB1P25-201ENST00000468402 DSG2Q14126 1118 aa6.78□□□□□ -1.32
HMGB1P25-201ENST00000468402 ADGRD1Q6QNK2 874 aa6.78□□□□□ -1.32
HMGB1P25-201ENST00000468402 FAM117AQ9C073 453 aa6.78□□□□□ -1.32
HMGB1P25-201ENST00000468402 MAP3K9P80192 1104 aa6.77□□□□□ -1.33
HMGB1P25-201ENST00000468402 PDIA6Q15084 440 aa6.77□□□□□ -1.33
HMGB1P25-201ENST00000468402 PCDHGA4Q9Y5G9 962 aa6.77□□□□□ -1.33
HMGB1P25-201ENST00000468402 MINK1Q8N4C8 1332 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 PSDA5PKW4 1024 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 GOLGA8CPA6NN73 597 aa6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 ARHGAP33O14559 1287 aa6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 PTPN5P54829 565 aa6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 DDRGK1Q96HY6 314 aa6.76□□□□□ -1.33
HMGB1P25-201ENST00000468402 PLPP6Q8IY26 295 aa6.74□□□□□ -1.33
HMGB1P25-201ENST00000468402 IRF6O14896 467 aa6.73□□□□□ -1.33
HMGB1P25-201ENST00000468402 MAP2K5Q13163 448 aa6.73□□□□□ -1.33
HMGB1P25-201ENST00000468402 TTLL12Q14166 644 aaPredicted RBP6.73□□□□□ -1.33
HMGB1P25-201ENST00000468402 PPP4R3BQ5MIZ7 849 aa6.73□□□□□ -1.33
HMGB1P25-201ENST00000468402 CCDC102AQ96A19 550 aa6.73□□□□□ -1.33
HMGB1P25-201ENST00000468402 FOXK1P85037 733 aa6.72□□□□□ -1.33
HMGB1P25-201ENST00000468402 UPF1Q92900 1129 aaKnown RBP eCLIP6.72□□□□□ -1.33
HMGB1P25-201ENST00000468402 ATP1B4Q9UN42 357 aaPredicted RBP6.72□□□□□ -1.33
HMGB1P25-201ENST00000468402 APBB1O00213 710 aa6.71□□□□□ -1.34
HMGB1P25-201ENST00000468402 GNPATO15228 680 aa6.71□□□□□ -1.34
HMGB1P25-201ENST00000468402 TBC1D12O60347 775 aa6.71□□□□□ -1.34
HMGB1P25-201ENST00000468402 IRX2Q9BZI1 471 aaPredicted RBP6.71□□□□□ -1.34
HMGB1P25-201ENST00000468402 ARID3CA6NKF2 412 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 FCHSD2O94868 740 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 RANGAP1P46060 587 aaPredicted RBP6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 PSEN2P49810 448 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 FLIIQ13045 1269 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 DDX12PQ92771 950 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 KCNK17Q96T54 332 aa6.7□□□□□ -1.34
HMGB1P25-201ENST00000468402 PLEKHG3A1L390 1219 aa6.69□□□□□ -1.34
HMGB1P25-201ENST00000468402 GPR37O15354 613 aa6.69□□□□□ -1.34
HMGB1P25-201ENST00000468402 HIC1Q14526 733 aa6.69□□□□□ -1.34
HMGB1P25-201ENST00000468402 PARP9Q8IXQ6 854 aa6.69□□□□□ -1.34
HMGB1P25-201ENST00000468402 AMHR2Q16671 573 aa6.68□□□□□ -1.34
HMGB1P25-201ENST00000468402 TRIM26Q12899 539 aaPredicted RBP6.67□□□□□ -1.34
HMGB1P25-201ENST00000468402 PCMTD1Q96MG8 357 aaPredicted RBP6.67□□□□□ -1.34
HMGB1P25-201ENST00000468402 OSBPP22059 807 aa6.66□□□□□ -1.34
HMGB1P25-201ENST00000468402 FECHP22830 423 aa6.66□□□□□ -1.34
HMGB1P25-201ENST00000468402 DMRTA1Q5VZB9 504 aa6.66□□□□□ -1.34
HMGB1P25-201ENST00000468402 TK2O00142 265 aa6.65□□□□□ -1.34
HMGB1P25-201ENST00000468402 POTEEQ6S8J3 1075 aa6.65□□□□□ -1.34
HMGB1P25-201ENST00000468402 SLC34A2O95436 690 aa6.64□□□□□ -1.35
HMGB1P25-201ENST00000468402 C1orf115Q9H7X2 142 aa6.64□□□□□ -1.35
HMGB1P25-201ENST00000468402 KIF3CO14782 793 aa6.63□□□□□ -1.35
HMGB1P25-201ENST00000468402 GIGYF2Q6Y7W6 1299 aaKnown RBP6.63□□□□□ -1.35
HMGB1P25-201ENST00000468402 ZNF454Q8N9F8 522 aa6.62□□□□□ -1.35
HMGB1P25-201ENST00000468402 EVI5O60447 810 aa6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 PDIA4P13667 645 aaKnown RBP6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 Q6ZNB5 142 aa6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 MRPL50Q8N5N7 158 aaKnown RBP6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 WNT2BQ93097 391 aa6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 CLUAP1Q96AJ1 413 aa6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 GOPCQ9HD26 462 aa6.61□□□□□ -1.35
HMGB1P25-201ENST00000468402 MS4A1P11836 297 aa6.6□□□□□ -1.35
HMGB1P25-201ENST00000468402 PTGDRQ13258 359 aa6.59□□□□□ -1.35
HMGB1P25-201ENST00000468402 OXER1Q8TDS5 423 aa6.59□□□□□ -1.35
HMGB1P25-201ENST00000468402 ZBTB7CA1YPR0 619 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 HRO43593 1189 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 RAD21O60216 631 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 TRAK2O60296 914 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 HRCP23327 699 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 PTPREP23469 700 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 CLCN1P35523 988 aa6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 MDM2Q00987 491 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P25-201ENST00000468402 A6NJR5 290 aa6.57□□□□□ -1.36
HMGB1P25-201ENST00000468402 MAP3K7O43318 606 aa6.57□□□□□ -1.36
HMGB1P25-201ENST00000468402 CCDC82Q8N4S0 544 aa6.57□□□□□ -1.36
HMGB1P25-201ENST00000468402 RBM33Q96EV2 1170 aaKnown RBP6.57□□□□□ -1.36
HMGB1P25-201ENST00000468402 NBPF3Q9H094 633 aa6.57□□□□□ -1.36
HMGB1P25-201ENST00000468402 SSTR3P32745 418 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P25-201ENST00000468402 PRIM1P49642 420 aaKnown RBP6.56□□□□□ -1.36
HMGB1P25-201ENST00000468402 SH3D19Q5HYK7 790 aa6.56□□□□□ -1.36
HMGB1P25-201ENST00000468402 PTCD2Q8WV60 388 aaKnown RBP6.56□□□□□ -1.36
HMGB1P25-201ENST00000468402 ZNF777Q9ULD5 760 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P25-201ENST00000468402 RGS20O76081 388 aa6.55□□□□□ -1.36
HMGB1P25-201ENST00000468402 REPIN1Q9BWE0 567 aaKnown RBP6.55□□□□□ -1.36
HMGB1P25-201ENST00000468402 GPCPD1Q9NPB8 672 aa6.55□□□□□ -1.36
HMGB1P25-201ENST00000468402 POLR3EQ9NVU0 708 aa6.55□□□□□ -1.36
HMGB1P25-201ENST00000468402 VPS9D1Q9Y2B5 631 aa6.55□□□□□ -1.36
HMGB1P25-201ENST00000468402 ONECUT3O60422 494 aaPredicted RBP6.54□□□□□ -1.36
HMGB1P25-201ENST00000468402 SKIV2LQ15477 1246 aaKnown RBP6.54□□□□□ -1.36
HMGB1P25-201ENST00000468402 THSD4Q6ZMP0 1018 aa6.54□□□□□ -1.36
HMGB1P25-201ENST00000468402 NPM2Q86SE8 214 aaKnown RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms