RNA–Protein interactions for RNA: ENST00000434407.6

HLA-F-220, Transcript of major histocompatibility complex, class I, F, humanhuman

BASIC

Gene HLA-F, Length 884 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-220ENST00000434407 CHIC2Q9UKJ5 165 aa28.17■■■□□ 2.1
HLA-F-220ENST00000434407 RNF17Q9BXT8 1623 aaKnown RBP28.16■■■□□ 2.1
HLA-F-220ENST00000434407 RRP7BPQ9NSQ0 103 aa28.15■■■□□ 2.1
HLA-F-220ENST00000434407 C3P01024 1663 aa28.14■■■□□ 2.1
HLA-F-220ENST00000434407 SETD1BQ9UPS6 1966 aaKnown RBP28.14■■■□□ 2.1
HLA-F-220ENST00000434407 ERBINQ96RT1 1412 aa28.14■■■□□ 2.1
HLA-F-220ENST00000434407 FAM135AQ9P2D6 1515 aa28.13■■■□□ 2.09
HLA-F-220ENST00000434407 ESF1Q9H501 851 aaKnown RBP28.13■■■□□ 2.09
HLA-F-220ENST00000434407 CLTCQ00610 1675 aaKnown RBP28.12■■■□□ 2.09
HLA-F-220ENST00000434407 ROCK1Q13464 1354 aa28.1■■■□□ 2.09
HLA-F-220ENST00000434407 CEBPAP49715 358 aaPredicted RBP28.09■■■□□ 2.09
HLA-F-220ENST00000434407 MROH1Q8NDA8 1641 aa28.09■■■□□ 2.09
HLA-F-220ENST00000434407 ZMYM3Q14202 1370 aa28.08■■■□□ 2.09
HLA-F-220ENST00000434407 KDM5DQ9BY66 1539 aa28.06■■■□□ 2.08
HLA-F-220ENST00000434407 DEPDC5O75140 1603 aa28.04■■■□□ 2.08
HLA-F-220ENST00000434407 PLPPR3Q6T4P5 718 aa28.02■■■□□ 2.08
HLA-F-220ENST00000434407 PRDM15P57071 1507 aaPredicted RBP28.02■■■□□ 2.08
HLA-F-220ENST00000434407 ANKRD50Q9ULJ7 1429 aa28.01■■■□□ 2.07
HLA-F-220ENST00000434407 ZC3H13Q5T200 1668 aaKnown RBP28■■■□□ 2.07
HLA-F-220ENST00000434407 WASHC2CQ9Y4E1 1318 aa28■■■□□ 2.07
HLA-F-220ENST00000434407 NPATQ14207 1427 aa28■■■□□ 2.07
HLA-F-220ENST00000434407 ABCC3O15438 1527 aa27.99■■■□□ 2.07
HLA-F-220ENST00000434407 LMTK3Q96Q04 1460 aa27.99■■■□□ 2.07
HLA-F-220ENST00000434407 ITGAEP38570 1179 aa27.98■■■□□ 2.07
HLA-F-220ENST00000434407 PREX1Q8TCU6 1659 aa27.97■■■□□ 2.07
HLA-F-220ENST00000434407 VWDEQ8N2E2 1590 aa27.94■■■□□ 2.06
HLA-F-220ENST00000434407 CEP152O94986 1710 aa27.94■■■□□ 2.06
HLA-F-220ENST00000434407 PZPP20742 1482 aa27.94■■■□□ 2.06
HLA-F-220ENST00000434407 CAMSAP1Q5T5Y3 1602 aa27.89■■■□□ 2.05
HLA-F-220ENST00000434407 LMTK2Q8IWU2 1503 aa27.88■■■□□ 2.05
HLA-F-220ENST00000434407 UHRF1BP1Q6BDS2 1440 aa27.88■■■□□ 2.05
HLA-F-220ENST00000434407 KANK1Q14678 1352 aa27.87■■■□□ 2.05
HLA-F-220ENST00000434407 UNC13BO14795 1591 aa27.86■■■□□ 2.05
HLA-F-220ENST00000434407 ARHGAP31Q2M1Z3 1444 aa27.86■■■□□ 2.05
HLA-F-220ENST00000434407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.86■■■□□ 2.05
HLA-F-220ENST00000434407 FBXO31Q5XUX0 539 aaPredicted RBP27.84■■■□□ 2.05
HLA-F-220ENST00000434407 CFAP65Q6ZU64 1925 aaKnown RBP27.84■■■□□ 2.05
HLA-F-220ENST00000434407 NAIPQ13075 1403 aa27.84■■■□□ 2.05
HLA-F-220ENST00000434407 GCC2Q8IWJ2 1684 aa27.83■■■□□ 2.05
HLA-F-220ENST00000434407 MYO3AQ8NEV4 1616 aa27.81■■■□□ 2.04
HLA-F-220ENST00000434407 HFM1A2PYH4 1435 aa27.81■■■□□ 2.04
HLA-F-220ENST00000434407 SPATA31D1Q6ZQQ2 1576 aa27.81■■■□□ 2.04
HLA-F-220ENST00000434407 ZNF142P52746 1687 aaPredicted RBP27.81■■■□□ 2.04
HLA-F-220ENST00000434407 TNRQ92752 1358 aa27.79■■■□□ 2.04
HLA-F-220ENST00000434407 HSPA2P54652 639 aa27.78■■■□□ 2.04
HLA-F-220ENST00000434407 ERVK-7P63135 1459 aa27.77■■■□□ 2.04
HLA-F-220ENST00000434407 EFCAB6Q5THR3 1501 aa27.77■■■□□ 2.04
HLA-F-220ENST00000434407 IQGAP3Q86VI3 1631 aa27.75■■■□□ 2.03
HLA-F-220ENST00000434407 TET3O43151 1660 aa27.75■■■□□ 2.03
HLA-F-220ENST00000434407 CEP170BQ9Y4F5 1589 aaPredicted RBP27.74■■■□□ 2.03
HLA-F-220ENST00000434407 A2ML1A8K2U0 1454 aa27.73■■■□□ 2.03
HLA-F-220ENST00000434407 NLRP1Q9C000 1473 aa27.72■■■□□ 2.03
HLA-F-220ENST00000434407 RPRD2Q5VT52 1461 aaKnown RBP27.7■■■□□ 2.02
HLA-F-220ENST00000434407 NUP155O75694 1391 aa27.69■■■□□ 2.02
HLA-F-220ENST00000434407 STRCQ7RTU9 1775 aa27.68■■■□□ 2.02
HLA-F-220ENST00000434407 NOS1P29475 1434 aa27.67■■■□□ 2.02
HLA-F-220ENST00000434407 E9PCH4 1651 aa27.64■■■□□ 2.02
HLA-F-220ENST00000434407 PLA2R1Q13018 1463 aa27.63■■■□□ 2.01
HLA-F-220ENST00000434407 SYNMO15061 1565 aa27.62■■■□□ 2.01
HLA-F-220ENST00000434407 UGGT1Q9NYU2 1555 aa27.6■■■□□ 2.01
HLA-F-220ENST00000434407 UBR1Q8IWV7 1749 aa27.56■■■□□ 2
HLA-F-220ENST00000434407 THEMISQ8N1K5 641 aaPredicted RBP27.55■■■□□ 2
HLA-F-220ENST00000434407 SETD5Q9C0A6 1442 aa27.55■■■□□ 2
HLA-F-220ENST00000434407 KDM5AP29375 1690 aaKnown RBP27.54■■■□□ 2
HLA-F-220ENST00000434407 PIK3C2BO00750 1634 aa27.53■■■□□ 2
HLA-F-220ENST00000434407 SLC52A1Q9NWF4 448 aa27.53■■■□□ 2
HLA-F-220ENST00000434407 IDI1Q13907 227 aa27.52■■■□□ 2
HLA-F-220ENST00000434407 PTPRTO14522 1441 aa27.51■■□□□ 1.99
HLA-F-220ENST00000434407 PKD2Q13563 968 aa27.51■■□□□ 1.99
HLA-F-220ENST00000434407 DMRT2Q9Y5R5 561 aa27.51■■□□□ 1.99
HLA-F-220ENST00000434407 ACIN1Q9UKV3 1341 aaKnown RBP27.49■■□□□ 1.99
HLA-F-220ENST00000434407 TRIM52Q96A61 297 aa27.49■■□□□ 1.99
HLA-F-220ENST00000434407 POLR1AO95602 1720 aaPredicted RBP27.48■■□□□ 1.99
HLA-F-220ENST00000434407 SPHKAPQ2M3C7 1700 aa27.47■■□□□ 1.99
HLA-F-220ENST00000434407 NCKAP5LQ9HCH0 1330 aa27.47■■□□□ 1.99
HLA-F-220ENST00000434407 ARHGAP23Q9P227 1491 aa27.45■■□□□ 1.99
HLA-F-220ENST00000434407 SLIT1O75093 1534 aa27.45■■□□□ 1.98
HLA-F-220ENST00000434407 ADGRB3O60242 1522 aa27.44■■□□□ 1.98
HLA-F-220ENST00000434407 RAB3GAP2Q9H2M9 1393 aa27.44■■□□□ 1.98
HLA-F-220ENST00000434407 NEURL4Q96JN8 1562 aa27.43■■□□□ 1.98
HLA-F-220ENST00000434407 ANKLE2Q86XL3 938 aa27.42■■□□□ 1.98
HLA-F-220ENST00000434407 SLC4A1APQ9BWU0 796 aaKnown RBP27.42■■□□□ 1.98
HLA-F-220ENST00000434407 MED14O60244 1454 aa27.41■■□□□ 1.98
HLA-F-220ENST00000434407 MYO5BQ9ULV0 1848 aa27.41■■□□□ 1.98
HLA-F-220ENST00000434407 HRCP23327 699 aa27.4■■□□□ 1.98
HLA-F-220ENST00000434407 TMEM131LA2VDJ0 1609 aa27.4■■□□□ 1.98
HLA-F-220ENST00000434407 TMEM2Q9UHN6 1383 aa27.39■■□□□ 1.98
HLA-F-220ENST00000434407 TRPM2O94759 1503 aa27.38■■□□□ 1.97
HLA-F-220ENST00000434407 STAG3Q9UJ98 1225 aa27.38■■□□□ 1.97
HLA-F-220ENST00000434407 MPHOSPH9Q99550 1183 aa27.36■■□□□ 1.97
HLA-F-220ENST00000434407 SCAF11Q99590 1463 aaKnown RBP27.34■■□□□ 1.97
HLA-F-220ENST00000434407 LTKP29376 864 aa27.34■■□□□ 1.97
HLA-F-220ENST00000434407 NPHP4O75161 1426 aaPredicted RBP27.33■■□□□ 1.96
HLA-F-220ENST00000434407 CLTCL1P53675 1640 aa27.32■■□□□ 1.96
HLA-F-220ENST00000434407 IQGAP1P46940 1657 aa27.31■■□□□ 1.96
HLA-F-220ENST00000434407 TXNDC2Q86VQ3 553 aa27.3■■□□□ 1.96
HLA-F-220ENST00000434407 ZFYVE9O95405 1425 aa27.3■■□□□ 1.96
HLA-F-220ENST00000434407 EID1Q9Y6B2 187 aa27.29■■□□□ 1.96
HLA-F-220ENST00000434407 KIF1BO60333 1816 aa27.27■■□□□ 1.96
HLA-F-220ENST00000434407 RIMS2Q9UQ26 1411 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms