RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ANO8Q9HCE9 1232 aaPredicted RBP9.28□□□□□ -0.92
CLK1-202ENST00000409403 LAMC3Q9Y6N6 1575 aa9.27□□□□□ -0.93
CLK1-202ENST00000409403 WDR62O43379 1518 aa9.27□□□□□ -0.93
CLK1-202ENST00000409403 GTF3C3Q9Y5Q9 886 aa9.26□□□□□ -0.93
CLK1-202ENST00000409403 NCAPD3P42695 1498 aa9.24□□□□□ -0.93
CLK1-202ENST00000409403 FCHSD2O94868 740 aa9.24□□□□□ -0.93
CLK1-202ENST00000409403 HIC1Q14526 733 aa9.24□□□□□ -0.93
CLK1-202ENST00000409403 PCDHGA4Q9Y5G9 962 aa9.24□□□□□ -0.93
CLK1-202ENST00000409403 MINK1Q8N4C8 1332 aaPredicted RBP9.24□□□□□ -0.93
CLK1-202ENST00000409403 TRIM66O15016 1216 aa9.23□□□□□ -0.93
CLK1-202ENST00000409403 GNPATO15228 680 aa9.23□□□□□ -0.93
CLK1-202ENST00000409403 PRIM1P49642 420 aaKnown RBP9.23□□□□□ -0.93
CLK1-202ENST00000409403 MAP2K5Q13163 448 aa9.23□□□□□ -0.93
CLK1-202ENST00000409403 MRC2Q9UBG0 1479 aa9.22□□□□□ -0.93
CLK1-202ENST00000409403 PHF14O94880 888 aa9.22□□□□□ -0.93
CLK1-202ENST00000409403 EPAS1Q99814 870 aa9.22□□□□□ -0.93
CLK1-202ENST00000409403 ST18O60284 1047 aa9.2□□□□□ -0.94
CLK1-202ENST00000409403 EN1Q05925 392 aaPredicted RBP9.2□□□□□ -0.94
CLK1-202ENST00000409403 PDE4DQ08499 809 aa9.2□□□□□ -0.94
CLK1-202ENST00000409403 PTGDRQ13258 359 aa9.2□□□□□ -0.94
CLK1-202ENST00000409403 IRF6O14896 467 aa9.2□□□□□ -0.94
CLK1-202ENST00000409403 GPBP1L1Q9HC44 474 aaPredicted RBP9.2□□□□□ -0.94
CLK1-202ENST00000409403 SOCS7O14512 581 aa9.19□□□□□ -0.94
CLK1-202ENST00000409403 CCDC102AQ96A19 550 aa9.19□□□□□ -0.94
CLK1-202ENST00000409403 SNPHO15079 494 aa9.18□□□□□ -0.94
CLK1-202ENST00000409403 MAP3K7O43318 606 aa9.18□□□□□ -0.94
CLK1-202ENST00000409403 FECHP22830 423 aa9.18□□□□□ -0.94
CLK1-202ENST00000409403 PCDHGA10Q9Y5H3 936 aa9.18□□□□□ -0.94
CLK1-202ENST00000409403 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
CLK1-202ENST00000409403 KDM4FA0A1W2PPD8 638 aa9.17□□□□□ -0.94
CLK1-202ENST00000409403 DOK7Q18PE1 504 aa9.17□□□□□ -0.94
CLK1-202ENST00000409403 KDM4CQ9H3R0 1056 aa9.17□□□□□ -0.94
CLK1-202ENST00000409403 DAXXQ9UER7 740 aaPredicted RBP9.17□□□□□ -0.94
CLK1-202ENST00000409403 HMGXB3Q12766 1538 aa9.17□□□□□ -0.94
CLK1-202ENST00000409403 TYW1BQ6NUM6 668 aa9.16□□□□□ -0.94
CLK1-202ENST00000409403 ILDR2Q71H61 639 aa9.16□□□□□ -0.94
CLK1-202ENST00000409403 FBXW7Q969H0 707 aa9.16□□□□□ -0.94
CLK1-202ENST00000409403 JPH4Q96JJ6 628 aa9.16□□□□□ -0.94
CLK1-202ENST00000409403 PDS5BQ9NTI5 1447 aa9.15□□□□□ -0.94
CLK1-202ENST00000409403 RIMBP2O15034 1052 aa9.15□□□□□ -0.94
CLK1-202ENST00000409403 RBM33Q96EV2 1170 aaKnown RBP9.15□□□□□ -0.94
CLK1-202ENST00000409403 CDHR5Q9HBB8 845 aa9.15□□□□□ -0.94
CLK1-202ENST00000409403 HOXB3P14651 431 aaPredicted RBP9.14□□□□□ -0.95
CLK1-202ENST00000409403 AMHR2Q16671 573 aa9.14□□□□□ -0.95
CLK1-202ENST00000409403 ZSWIM6Q9HCJ5 1215 aa9.13□□□□□ -0.95
CLK1-202ENST00000409403 NPDC1Q9NQX5 325 aaPredicted RBP9.13□□□□□ -0.95
CLK1-202ENST00000409403 FOSBP53539 338 aa9.13□□□□□ -0.95
CLK1-202ENST00000409403 ATAD2BQ9ULI0 1458 aa9.13□□□□□ -0.95
CLK1-202ENST00000409403 HECW2Q9P2P5 1572 aa9.13□□□□□ -0.95
CLK1-202ENST00000409403 TSR1Q2NL82 804 aaKnown RBP9.12□□□□□ -0.95
CLK1-202ENST00000409403 ARSIQ5FYB1 569 aa9.12□□□□□ -0.95
CLK1-202ENST00000409403 ERICH6Q7L0X2 663 aa9.12□□□□□ -0.95
CLK1-202ENST00000409403 FBXO41Q8TF61 875 aa9.12□□□□□ -0.95
CLK1-202ENST00000409403 CHD1O14646 1710 aa9.11□□□□□ -0.95
CLK1-202ENST00000409403 NUDT7P0C024 238 aa9.11□□□□□ -0.95
CLK1-202ENST00000409403 TIMELESSQ9UNS1 1208 aa9.11□□□□□ -0.95
CLK1-202ENST00000409403 IL27Q8NEV9 243 aa9.1□□□□□ -0.95
CLK1-202ENST00000409403 PARP9Q8IXQ6 854 aa9.1□□□□□ -0.95
CLK1-202ENST00000409403 ZNF710Q8N1W2 664 aa9.1□□□□□ -0.95
CLK1-202ENST00000409403 ZNF454Q8N9F8 522 aa9.1□□□□□ -0.95
CLK1-202ENST00000409403 KHSRPQ92945 711 aaKnown RBP eCLIP9.1□□□□□ -0.955e-8■■■□□ 15.6
CLK1-202ENST00000409403 ZDHHC16Q969W1 377 aa9.1□□□□□ -0.95
CLK1-202ENST00000409403 GPR153Q6NV75 609 aa9.09□□□□□ -0.95
CLK1-202ENST00000409403 CERKQ8TCT0 537 aa9.09□□□□□ -0.95
CLK1-202ENST00000409403 TTLL12Q14166 644 aaPredicted RBP9.07□□□□□ -0.96
CLK1-202ENST00000409403 C6orf132Q5T0Z8 1188 aa9.07□□□□□ -0.96
CLK1-202ENST00000409403 CDAN1Q8IWY9 1227 aa9.07□□□□□ -0.96
CLK1-202ENST00000409403 MARVELD3Q96A59 401 aa9.07□□□□□ -0.96
CLK1-202ENST00000409403 DCAF1Q9Y4B6 1507 aa9.07□□□□□ -0.96
CLK1-202ENST00000409403 MYT1Q01538 1121 aa9.07□□□□□ -0.96
CLK1-202ENST00000409403 DDRGK1Q96HY6 314 aa9.06□□□□□ -0.96
CLK1-202ENST00000409403 FAM117AQ9C073 453 aa9.06□□□□□ -0.96
CLK1-202ENST00000409403 ADAM33Q9BZ11 813 aa9.05□□□□□ -0.96
CLK1-202ENST00000409403 SMARCA4P51532 1647 aa9.04□□□□□ -0.96
CLK1-202ENST00000409403 ZCCHC6Q5VYS8 1495 aaKnown RBP9.03□□□□□ -0.96
CLK1-202ENST00000409403 PSDA5PKW4 1024 aaPredicted RBP9.03□□□□□ -0.96
CLK1-202ENST00000409403 GIGYF2Q6Y7W6 1299 aaKnown RBP9.03□□□□□ -0.96
CLK1-202ENST00000409403 RBM27Q9P2N5 1060 aaKnown RBP9.03□□□□□ -0.96
CLK1-202ENST00000409403 LHX6Q9UPM6 363 aa9.03□□□□□ -0.96
CLK1-202ENST00000409403 KIF13AQ9H1H9 1805 aa9.02□□□□□ -0.96
CLK1-202ENST00000409403 EMP3P54852 163 aa9.02□□□□□ -0.97
CLK1-202ENST00000409403 PPP4R3BQ5MIZ7 849 aa9.02□□□□□ -0.97
CLK1-202ENST00000409403 CLCN1P35523 988 aa9.01□□□□□ -0.97
CLK1-202ENST00000409403 PADI6Q6TGC4 694 aa9.01□□□□□ -0.97
CLK1-202ENST00000409403 C14orf37Q86TY3 774 aa9.01□□□□□ -0.97
CLK1-202ENST00000409403 RSF1Q96T23 1441 aaPredicted RBP9.01□□□□□ -0.97
CLK1-202ENST00000409403 PLEKHG3A1L390 1219 aa9□□□□□ -0.97
CLK1-202ENST00000409403 OATP04181 439 aa9□□□□□ -0.97
CLK1-202ENST00000409403 BAZ1BQ9UIG0 1483 aaKnown RBP9□□□□□ -0.97
CLK1-202ENST00000409403 DISP3Q9P2K9 1392 aa9□□□□□ -0.97
CLK1-202ENST00000409403 METTL3Q86U44 580 aaKnown RBP9□□□□□ -0.97
CLK1-202ENST00000409403 MDM2Q00987 491 aaPredicted RBP8.99□□□□□ -0.97
CLK1-202ENST00000409403 FAM161AQ3B820 660 aa8.99□□□□□ -0.97
CLK1-202ENST00000409403 TTC13Q8NBP0 860 aa8.99□□□□□ -0.97
CLK1-202ENST00000409403 PHOX2BQ99453 314 aa8.99□□□□□ -0.97
CLK1-202ENST00000409403 REPIN1Q9BWE0 567 aaKnown RBP8.99□□□□□ -0.97
CLK1-202ENST00000409403 GPCPD1Q9NPB8 672 aa8.99□□□□□ -0.97
CLK1-202ENST00000409403 CEP164Q9UPV0 1460 aa8.99□□□□□ -0.97
CLK1-202ENST00000409403 HOXB1P14653 301 aaPredicted RBP8.98□□□□□ -0.97
CLK1-202ENST00000409403 PRSS12P56730 875 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms