RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NUP155O75694 1391 aa26.7■■□□□ 1.86
SDC1-203ENST00000403076 KANK1Q14678 1352 aa26.65■■□□□ 1.86
SDC1-203ENST00000403076 AGLP35573 1532 aa26.65■■□□□ 1.86
SDC1-203ENST00000403076 MLECQ14165 292 aa26.65■■□□□ 1.86
SDC1-203ENST00000403076 UNC13BO14795 1591 aa26.63■■□□□ 1.85
SDC1-203ENST00000403076 SLC4A1APQ9BWU0 796 aaKnown RBP26.63■■□□□ 1.85
SDC1-203ENST00000403076 CCER1Q8TC90 406 aaPredicted RBP26.61■■□□□ 1.85
SDC1-203ENST00000403076 BCORL1Q5H9F3 1711 aa26.61■■□□□ 1.85
SDC1-203ENST00000403076 MPHOSPH9Q99550 1183 aa26.6■■□□□ 1.85
SDC1-203ENST00000403076 RNF17Q9BXT8 1623 aaKnown RBP26.59■■□□□ 1.85
SDC1-203ENST00000403076 DEPDC5O75140 1603 aa26.59■■□□□ 1.85
SDC1-203ENST00000403076 SIGLEC1Q9BZZ2 1709 aa26.58■■□□□ 1.85
SDC1-203ENST00000403076 DHX57Q6P158 1386 aaKnown RBP26.58■■□□□ 1.85
SDC1-203ENST00000403076 KDM5DQ9BY66 1539 aa26.57■■□□□ 1.84
SDC1-203ENST00000403076 WASHC2CQ9Y4E1 1318 aa26.57■■□□□ 1.84
SDC1-203ENST00000403076 PRDM15P57071 1507 aaPredicted RBP26.56■■□□□ 1.84
SDC1-203ENST00000403076 PZPP20742 1482 aa26.56■■□□□ 1.84
SDC1-203ENST00000403076 MROH1Q8NDA8 1641 aa26.55■■□□□ 1.84
SDC1-203ENST00000403076 FAM135AQ9P2D6 1515 aa26.55■■□□□ 1.84
SDC1-203ENST00000403076 ESF1Q9H501 851 aaKnown RBP26.54■■□□□ 1.84
SDC1-203ENST00000403076 PKD2Q13563 968 aa26.53■■□□□ 1.84
SDC1-203ENST00000403076 PPP6R1Q9UPN7 881 aa26.53■■□□□ 1.84
SDC1-203ENST00000403076 IQGAP3Q86VI3 1631 aa26.53■■□□□ 1.84
SDC1-203ENST00000403076 VWDEQ8N2E2 1590 aa26.5■■□□□ 1.83
SDC1-203ENST00000403076 FOXD1Q16676 465 aa26.48■■□□□ 1.83
SDC1-203ENST00000403076 ABCC3O15438 1527 aa26.45■■□□□ 1.82
SDC1-203ENST00000403076 CEP152O94986 1710 aa26.45■■□□□ 1.82
SDC1-203ENST00000403076 LMTK2Q8IWU2 1503 aa26.44■■□□□ 1.82
SDC1-203ENST00000403076 TET3O43151 1660 aa26.42■■□□□ 1.82
SDC1-203ENST00000403076 ZC3H13Q5T200 1668 aaKnown RBP26.41■■□□□ 1.82
SDC1-203ENST00000403076 CLSPNQ9HAW4 1339 aa26.38■■□□□ 1.81
SDC1-203ENST00000403076 EFCAB6Q5THR3 1501 aa26.37■■□□□ 1.81
SDC1-203ENST00000403076 CLTCQ00610 1675 aaKnown RBP26.37■■□□□ 1.81
SDC1-203ENST00000403076 CNTLNQ9NXG0 1405 aa26.37■■□□□ 1.81
SDC1-203ENST00000403076 CAMSAP1Q5T5Y3 1602 aa26.36■■□□□ 1.81
SDC1-203ENST00000403076 E9PCH4 1651 aa26.35■■□□□ 1.81
SDC1-203ENST00000403076 NPATQ14207 1427 aa26.33■■□□□ 1.81
SDC1-203ENST00000403076 ZMYM3Q14202 1370 aa26.33■■□□□ 1.81
SDC1-203ENST00000403076 ANKRD30BQ9BXX2 1392 aa26.33■■□□□ 1.81
SDC1-203ENST00000403076 ARHGAP31Q2M1Z3 1444 aa26.32■■□□□ 1.8
SDC1-203ENST00000403076 RPRD2Q5VT52 1461 aaKnown RBP26.31■■□□□ 1.8
SDC1-203ENST00000403076 FER1L4A9Z1Z3 1794 aa26.31■■□□□ 1.8
SDC1-203ENST00000403076 NEUROD1Q13562 356 aa26.3■■□□□ 1.8
SDC1-203ENST00000403076 SIN3AQ96ST3 1273 aa26.3■■□□□ 1.8
SDC1-203ENST00000403076 PLPPR3Q6T4P5 718 aa26.28■■□□□ 1.8
SDC1-203ENST00000403076 CFAP65Q6ZU64 1925 aaKnown RBP26.28■■□□□ 1.8
SDC1-203ENST00000403076 MADDQ8WXG6 1647 aa26.27■■□□□ 1.8
SDC1-203ENST00000403076 ADAMTSL3P82987 1691 aa26.26■■□□□ 1.8
SDC1-203ENST00000403076 FBXO31Q5XUX0 539 aaPredicted RBP26.26■■□□□ 1.79
SDC1-203ENST00000403076 CEBPAP49715 358 aaPredicted RBP26.24■■□□□ 1.79
SDC1-203ENST00000403076 PTPRTO14522 1441 aa26.24■■□□□ 1.79
SDC1-203ENST00000403076 PLA2R1Q13018 1463 aa26.24■■□□□ 1.79
SDC1-203ENST00000403076 MROH2AA6NES4 1674 aa26.24■■□□□ 1.79
SDC1-203ENST00000403076 CCDC144AA2RUR9 1427 aa26.23■■□□□ 1.79
SDC1-203ENST00000403076 RIMS1Q86UR5 1692 aaKnown RBP26.23■■□□□ 1.79
SDC1-203ENST00000403076 SPHKAPQ2M3C7 1700 aa26.23■■□□□ 1.79
SDC1-203ENST00000403076 ERVK-7P63135 1459 aa26.2■■□□□ 1.78
SDC1-203ENST00000403076 NOS1P29475 1434 aa26.2■■□□□ 1.78
SDC1-203ENST00000403076 TRPM2O94759 1503 aa26.19■■□□□ 1.78
SDC1-203ENST00000403076 PREX1Q8TCU6 1659 aa26.19■■□□□ 1.78
SDC1-203ENST00000403076 C3P01024 1663 aa26.16■■□□□ 1.78
SDC1-203ENST00000403076 SLC52A1Q9NWF4 448 aa26.14■■□□□ 1.78
SDC1-203ENST00000403076 SPATA31D1Q6ZQQ2 1576 aa26.14■■□□□ 1.77
SDC1-203ENST00000403076 TNRQ92752 1358 aa26.13■■□□□ 1.77
SDC1-203ENST00000403076 CHGAP10645 457 aaKnown RBP26.13■■□□□ 1.77
SDC1-203ENST00000403076 SYNMO15061 1565 aa26.13■■□□□ 1.77
SDC1-203ENST00000403076 ZEB1P37275 1124 aaPredicted RBP26.12■■□□□ 1.77
SDC1-203ENST00000403076 TONSLQ96HA7 1378 aa26.12■■□□□ 1.77
SDC1-203ENST00000403076 UGGT1Q9NYU2 1555 aa26.12■■□□□ 1.77
SDC1-203ENST00000403076 CLTCL1P53675 1640 aa26.12■■□□□ 1.77
SDC1-203ENST00000403076 IDI1Q13907 227 aa26.11■■□□□ 1.77
SDC1-203ENST00000403076 KDM4FA0A1W2PPD8 638 aa26.1■■□□□ 1.77
SDC1-203ENST00000403076 PTPRMP28827 1452 aa26.1■■□□□ 1.77
SDC1-203ENST00000403076 RGL3Q3MIN7 710 aa26.09■■□□□ 1.77
SDC1-203ENST00000403076 STAG3Q9UJ98 1225 aa26.08■■□□□ 1.77
SDC1-203ENST00000403076 TIMELESSQ9UNS1 1208 aa26.06■■□□□ 1.76
SDC1-203ENST00000403076 PIK3C2BO00750 1634 aa26.03■■□□□ 1.76
SDC1-203ENST00000403076 ZNF326Q5BKZ1 582 aaKnown RBP26.03■■□□□ 1.76
SDC1-203ENST00000403076 KIF1BO60333 1816 aa26.02■■□□□ 1.76
SDC1-203ENST00000403076 L3MBTL2Q969R5 705 aa26.02■■□□□ 1.76
SDC1-203ENST00000403076 NLRP1Q9C000 1473 aa26■■□□□ 1.75
SDC1-203ENST00000403076 SPATA31E1Q6ZUB1 1445 aa26■■□□□ 1.75
SDC1-203ENST00000403076 DCAF11Q8TEB1 546 aa25.97■■□□□ 1.75
SDC1-203ENST00000403076 KDM2AQ9Y2K7 1162 aa25.96■■□□□ 1.75
SDC1-203ENST00000403076 ADGRB3O60242 1522 aa25.95■■□□□ 1.74
SDC1-203ENST00000403076 SETD1BQ9UPS6 1966 aaKnown RBP25.95■■□□□ 1.74
SDC1-203ENST00000403076 NEURL4Q96JN8 1562 aa25.92■■□□□ 1.74
SDC1-203ENST00000403076 TMEM131LA2VDJ0 1609 aa25.92■■□□□ 1.74
SDC1-203ENST00000403076 RPGRIP1LQ68CZ1 1315 aa25.91■■□□□ 1.74
SDC1-203ENST00000403076 MYO3AQ8NEV4 1616 aa25.91■■□□□ 1.74
SDC1-203ENST00000403076 PPP1R15AO75807 674 aaPredicted RBP25.91■■□□□ 1.74
SDC1-203ENST00000403076 A2ML1A8K2U0 1454 aa25.9■■□□□ 1.74
SDC1-203ENST00000403076 UHRF1BP1Q6BDS2 1440 aa25.89■■□□□ 1.74
SDC1-203ENST00000403076 THEMISQ8N1K5 641 aaPredicted RBP25.88■■□□□ 1.73
SDC1-203ENST00000403076 MYO5BQ9ULV0 1848 aa25.87■■□□□ 1.73
SDC1-203ENST00000403076 STAC3Q96MF2 364 aa25.87■■□□□ 1.73
SDC1-203ENST00000403076 CEP170BQ9Y4F5 1589 aaPredicted RBP25.86■■□□□ 1.73
SDC1-203ENST00000403076 NUTM2DQ5VT03 806 aaPredicted RBP25.85■■□□□ 1.73
SDC1-203ENST00000403076 UBR1Q8IWV7 1749 aa25.85■■□□□ 1.73
SDC1-203ENST00000403076 HDGFP51858 240 aaKnown RBP25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms