RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PTPRKQ15262 1439 aa33.21■■■□□ 2.91
CLN3-207ENST00000395653 FAM135AQ9P2D6 1515 aa33.2■■■□□ 2.91
CLN3-207ENST00000395653 RNF17Q9BXT8 1623 aaKnown RBP33.2■■■□□ 2.91
CLN3-207ENST00000395653 C3P01024 1663 aa33.17■■■□□ 2.9
CLN3-207ENST00000395653 CLTCQ00610 1675 aaKnown RBP33.17■■■□□ 2.9
CLN3-207ENST00000395653 PLPPR3Q6T4P5 718 aa33.16■■■□□ 2.9
CLN3-207ENST00000395653 CEBPAP49715 358 aaPredicted RBP33.14■■■□□ 2.9
CLN3-207ENST00000395653 ROCK1Q13464 1354 aa33.14■■■□□ 2.9
CLN3-207ENST00000395653 KDM5DQ9BY66 1539 aa33.13■■■□□ 2.89
CLN3-207ENST00000395653 ZMYM3Q14202 1370 aa33.12■■■□□ 2.89
CLN3-207ENST00000395653 MROH1Q8NDA8 1641 aa33.1■■■□□ 2.89
CLN3-207ENST00000395653 ITGAEP38570 1179 aa33.09■■■□□ 2.89
CLN3-207ENST00000395653 WASHC2CQ9Y4E1 1318 aa33.07■■■□□ 2.88
CLN3-207ENST00000395653 DEPDC5O75140 1603 aa33.06■■■□□ 2.88
CLN3-207ENST00000395653 PRDM15P57071 1507 aaPredicted RBP33.06■■■□□ 2.88
CLN3-207ENST00000395653 ANKRD50Q9ULJ7 1429 aa33.05■■■□□ 2.88
CLN3-207ENST00000395653 ZC3H13Q5T200 1668 aaKnown RBP33.05■■■□□ 2.88
CLN3-207ENST00000395653 NPATQ14207 1427 aa33.03■■■□□ 2.88
CLN3-207ENST00000395653 ABCC3O15438 1527 aa33.02■■■□□ 2.88
CLN3-207ENST00000395653 LMTK3Q96Q04 1460 aa33.02■■■□□ 2.88
CLN3-207ENST00000395653 PREX1Q8TCU6 1659 aa33■■■□□ 2.87
CLN3-207ENST00000395653 SETD1BQ9UPS6 1966 aaKnown RBP32.98■■■□□ 2.87
CLN3-207ENST00000395653 PZPP20742 1482 aa32.96■■■□□ 2.87
CLN3-207ENST00000395653 KANK1Q14678 1352 aa32.95■■■□□ 2.86
CLN3-207ENST00000395653 UHRF1BP1Q6BDS2 1440 aa32.93■■■□□ 2.86
CLN3-207ENST00000395653 CEP152O94986 1710 aa32.93■■■□□ 2.86
CLN3-207ENST00000395653 VWDEQ8N2E2 1590 aa32.92■■■□□ 2.86
CLN3-207ENST00000395653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.92■■■□□ 2.86
CLN3-207ENST00000395653 CAMSAP1Q5T5Y3 1602 aa32.91■■■□□ 2.86
CLN3-207ENST00000395653 LMTK2Q8IWU2 1503 aa32.88■■■□□ 2.85
CLN3-207ENST00000395653 UNC13BO14795 1591 aa32.88■■■□□ 2.85
CLN3-207ENST00000395653 ARHGAP31Q2M1Z3 1444 aa32.85■■■□□ 2.85
CLN3-207ENST00000395653 NAIPQ13075 1403 aa32.84■■■□□ 2.85
CLN3-207ENST00000395653 GCC2Q8IWJ2 1684 aa32.83■■■□□ 2.85
CLN3-207ENST00000395653 MYO3AQ8NEV4 1616 aa32.83■■■□□ 2.85
CLN3-207ENST00000395653 FBXO31Q5XUX0 539 aaPredicted RBP32.83■■■□□ 2.85
CLN3-207ENST00000395653 HFM1A2PYH4 1435 aa32.81■■■□□ 2.84
CLN3-207ENST00000395653 TNRQ92752 1358 aa32.81■■■□□ 2.84
CLN3-207ENST00000395653 SPATA31D1Q6ZQQ2 1576 aa32.8■■■□□ 2.84
CLN3-207ENST00000395653 HSPA2P54652 639 aa32.79■■■□□ 2.84
CLN3-207ENST00000395653 ZNF142P52746 1687 aaPredicted RBP32.78■■■□□ 2.84
CLN3-207ENST00000395653 ERVK-7P63135 1459 aa32.78■■■□□ 2.84
CLN3-207ENST00000395653 EFCAB6Q5THR3 1501 aa32.77■■■□□ 2.84
CLN3-207ENST00000395653 CEP170BQ9Y4F5 1589 aaPredicted RBP32.75■■■□□ 2.83
CLN3-207ENST00000395653 IQGAP3Q86VI3 1631 aa32.74■■■□□ 2.83
CLN3-207ENST00000395653 TET3O43151 1660 aa32.73■■■□□ 2.83
CLN3-207ENST00000395653 A2ML1A8K2U0 1454 aa32.72■■■□□ 2.83
CLN3-207ENST00000395653 NLRP1Q9C000 1473 aa32.72■■■□□ 2.83
CLN3-207ENST00000395653 NUP155O75694 1391 aa32.71■■■□□ 2.83
CLN3-207ENST00000395653 RPRD2Q5VT52 1461 aaKnown RBP32.68■■■□□ 2.82
CLN3-207ENST00000395653 CFAP65Q6ZU64 1925 aaKnown RBP32.64■■■□□ 2.82
CLN3-207ENST00000395653 NOS1P29475 1434 aa32.61■■■□□ 2.81
CLN3-207ENST00000395653 PLA2R1Q13018 1463 aa32.59■■■□□ 2.81
CLN3-207ENST00000395653 E9PCH4 1651 aa32.58■■■□□ 2.81
CLN3-207ENST00000395653 UGGT1Q9NYU2 1555 aa32.58■■■□□ 2.81
CLN3-207ENST00000395653 STRCQ7RTU9 1775 aa32.57■■■□□ 2.8
CLN3-207ENST00000395653 SYNMO15061 1565 aa32.57■■■□□ 2.8
CLN3-207ENST00000395653 THEMISQ8N1K5 641 aaPredicted RBP32.51■■■□□ 2.8
CLN3-207ENST00000395653 SETD5Q9C0A6 1442 aa32.51■■■□□ 2.79
CLN3-207ENST00000395653 TRIM52Q96A61 297 aa32.5■■■□□ 2.79
CLN3-207ENST00000395653 DMRT2Q9Y5R5 561 aa32.49■■■□□ 2.79
CLN3-207ENST00000395653 UBR1Q8IWV7 1749 aa32.48■■■□□ 2.79
CLN3-207ENST00000395653 PIK3C2BO00750 1634 aa32.48■■■□□ 2.79
CLN3-207ENST00000395653 SLC52A1Q9NWF4 448 aa32.48■■■□□ 2.79
CLN3-207ENST00000395653 PKD2Q13563 968 aa32.46■■■□□ 2.79
CLN3-207ENST00000395653 IDI1Q13907 227 aa32.46■■■□□ 2.79
CLN3-207ENST00000395653 ACIN1Q9UKV3 1341 aaKnown RBP32.46■■■□□ 2.79
CLN3-207ENST00000395653 KDM5AP29375 1690 aaKnown RBP32.45■■■□□ 2.79
CLN3-207ENST00000395653 PTPRTO14522 1441 aa32.44■■■□□ 2.78
CLN3-207ENST00000395653 NCKAP5LQ9HCH0 1330 aa32.42■■■□□ 2.78
CLN3-207ENST00000395653 ADGRB3O60242 1522 aa32.4■■■□□ 2.78
CLN3-207ENST00000395653 POLR1AO95602 1720 aaPredicted RBP32.4■■■□□ 2.78
CLN3-207ENST00000395653 RAB3GAP2Q9H2M9 1393 aa32.4■■■□□ 2.78
CLN3-207ENST00000395653 SLC4A1APQ9BWU0 796 aaKnown RBP32.39■■■□□ 2.78
CLN3-207ENST00000395653 SPHKAPQ2M3C7 1700 aa32.39■■■□□ 2.77
CLN3-207ENST00000395653 STAG3Q9UJ98 1225 aa32.38■■■□□ 2.77
CLN3-207ENST00000395653 ANKLE2Q86XL3 938 aa32.37■■■□□ 2.77
CLN3-207ENST00000395653 SLIT1O75093 1534 aa32.37■■■□□ 2.77
CLN3-207ENST00000395653 ARHGAP23Q9P227 1491 aa32.36■■■□□ 2.77
CLN3-207ENST00000395653 NEURL4Q96JN8 1562 aa32.35■■■□□ 2.77
CLN3-207ENST00000395653 TRPM2O94759 1503 aa32.32■■■□□ 2.76
CLN3-207ENST00000395653 TMEM2Q9UHN6 1383 aa32.32■■■□□ 2.76
CLN3-207ENST00000395653 MED14O60244 1454 aa32.31■■■□□ 2.76
CLN3-207ENST00000395653 TMEM131LA2VDJ0 1609 aa32.3■■■□□ 2.76
CLN3-207ENST00000395653 MPHOSPH9Q99550 1183 aa32.29■■■□□ 2.76
CLN3-207ENST00000395653 SCAF11Q99590 1463 aaKnown RBP32.28■■■□□ 2.76
CLN3-207ENST00000395653 HRCP23327 699 aa32.28■■■□□ 2.76
CLN3-207ENST00000395653 NPHP4O75161 1426 aaPredicted RBP32.25■■■□□ 2.75
CLN3-207ENST00000395653 TXNDC2Q86VQ3 553 aa32.24■■■□□ 2.75
CLN3-207ENST00000395653 EID1Q9Y6B2 187 aa32.24■■■□□ 2.75
CLN3-207ENST00000395653 LTKP29376 864 aa32.23■■■□□ 2.75
CLN3-207ENST00000395653 CLTCL1P53675 1640 aa32.22■■■□□ 2.75
CLN3-207ENST00000395653 MYO5BQ9ULV0 1848 aa32.22■■■□□ 2.75
CLN3-207ENST00000395653 IQGAP1P46940 1657 aa32.21■■■□□ 2.75
CLN3-207ENST00000395653 CHGAP10645 457 aaKnown RBP32.2■■■□□ 2.75
CLN3-207ENST00000395653 ZFYVE9O95405 1425 aa32.18■■■□□ 2.74
CLN3-207ENST00000395653 FOXD1Q16676 465 aa32.17■■■□□ 2.74
CLN3-207ENST00000395653 RIMS2Q9UQ26 1411 aa32.15■■■□□ 2.74
CLN3-207ENST00000395653 HDGFP51858 240 aaKnown RBP32.14■■■□□ 2.74
CLN3-207ENST00000395653 TRIM26Q12899 539 aaPredicted RBP32.11■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms